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Advanced therapy medicinal products development - from guidelines to medicines in the market Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-22
Catarina Frederico, André Conceição, Clévio Nóbrega, Liliana S. MendonçaIn Europe, Advanced Therapy Medicinal Products (ATMPs) include medicines based on gene therapy, somatic-cell therapy, tissue-engineered products, and combined ATMPs. ATMPs constitute an emerging and innovative class of medicines used to treat multiple pathologies and are particularly relevant in pathologies where therapeutic options are limited and require high medical needs. These therapies act, among
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CRISPR/Cas-powered nucleic acid amplification and amplification-free biosensors for public safety detection: Principles, advances and prospects Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-21
Bo Yi, Baoqing Zhou, Donggen Zhou, Luyu Yang, Hengyi XuRapid, accurate, cost-effective, and efficient ultrasensitive detection strategies are essential for public health safety (including food safety, disease prevention and environmental governance). The CRISPR/CRISPR-associated (Cas) detection is a cutting-edge technology that has been widely used in the detection of public health safety due to its targeted cleavage properties (signal amplification),
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A review on recent advancement in algal-bacterial aerobic granular sludge: From inoculation approaches to operation strategies Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-20
Xinyu Lyu, Ziyin Ai, Wenli Huang, Weiwei Huang, Zhongfang Lei, Tian Yuan, Motoo Utsumi, Duu-Jong LeeIn recent years, the environmental unsustainability of traditional wastewater treatment processes, alongside the growing emphasis on carbon neutrality and self-sufficiency in wastewater treatment plants (WWTPs), has drawn attention to algal-bacterial aerobic granular sludge (AGS) systems. This review synthesizes recent advances in algal-bacterial AGS, focusing on the latest research on its granulation
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Innovations in smart enzyme biosensors: Advancing the detection of antibiotic residues in aquaculture Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-19
Rui Ying, Nan Li, Yuyang Zhang, Hong Chen, Shutong Zhang, Rui Feng, Jiao Li, Sai Wang, Xiangzhao MaoIn aquaculture, the presence of antibiotic residues is an escalating concern that poses significant risks to human health. Establishing efficient and user-friendly detection methods for antibiotic residues has become crucial to mitigate these potential hazards. To address the limitations of traditional techniques, novel enzyme biosensors, offering high sensitivity and specificity and rapid response
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Advances in in vitro cultivation techniques for comprehensive analysis of human gut microbiome Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-13
Young Sung Jung, Nho-Eul Song, Seo Yeong Oh, Young Kyoung Park, Ye-Jin Kim, Hyunbin Seong, Sang-Mook You, Dong-Hyun Jung, Donghyun Shin, Mi-Gi Lee, Min-Cheol Lim, Nam Soo HanThe role of gut microbiota in human health and disease is becoming increasingly recognized. Historically, the impact of human gut microbiota on health has been studied using clinical trials and animal models. However, clinical studies often struggle with controlling variables and pinpointing disease-causing factors, while animal models fall short of accurately replicating the human gut environment
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Engineering catalytically promiscuous enzymes to serve new functions Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-13
Hong-Juan Diao, Li-Ming Lin, Li-Yuan Xu, Jia-Hao Yao, Ren-Chao Zheng, Yu-Guo ZhengCatalytic promiscuity in enzymes refers to their ability to catalyze multiple chemically distinct reactions in addition to their native activity. The increasing discovery of additional enzymes exhibiting catalytic promiscuity has underscored the significance of this trait in nature. The catalytic promiscuity of enzymes offers new avenues for functional redesign. Through protein engineering, existing
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Protease engineering: Approaches, tools, and emerging trends Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-12
Samantha G. Martinusen, Sage E. Nelson, Ethan W. Slaton, Lawton F. Long, Raymond Pho, Seyednima Ajayebi, Carl A. DenardEngineered proteases with bespoke substrate specificities and activities can empower broad and innovative applications in biomedicine, mass spectrometry-based proteomics, and chemical and synthetic biology. This review provides an authoritative, topical, and detailed description and discussion of the directed evolution and high-throughput strategies designed to engineer the substrate specificity of
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Revolutionizing agroindustry: Towards the industrial application of antimicrobial peptides against pathogens and pests Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-12
Sebastián Bermúdez-Puga, Bruno Mendes, Jean Pierre Ramos-Galarza, Pamela Oliveira de Souza de Azevedo, Attilio Converti, Francesco Molinari, Simon J. Moore, José R. Almeida, Ricardo Pinheiro de Souza OliveiraAntibiotics are essential chemicals for medicine and agritech. However, all antibiotics are small molecules that pathogens evolve antimicrobial resistance (AMR). Alternatively, antimicrobial peptides (AMPs) offer potential to overcome or evade AMR. AMPs provide broad-spectrum activity, favourable biosafety profiles, and a rapid and efficient mechanism of action with low resistance incidence. These
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From formate oxidation to CO₂ reduction: The role of formate dehydrogenase in sustainable carbon utilization Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-12
Yongmin Zheng, Chen Qi, Yangyi Qiao, Kang Liu, Yanxia Wang, Wankui Jiang, Yujia Jiang, Fengxue Xin, Feng Guo, Wenming Zhang, Min JiangThe escalation of global climate change and environmental degradation has made it imperative to develop innovative strategies to mitigate carbon dioxide (CO₂) emissions and enhance its utilization. Formate dehydrogenase (FDH) is a key enzyme capable of catalyzing the reversible conversion between CO₂ and formate. Due to its critical role in sustainable carbon recycling processes, FDH has garnered significant
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AI-driven de novo enzyme design: Strategies, applications, and future prospects Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-12
Xi-Chen Cui, Yan Zheng, Ye Liu, Zhiguang Yuchi, Ying-Jin YuanEnzymes are indispensable for biological processes and diverse applications across industries. While top-down modification strategies, such as directed evolution, have achieved remarkable success in optimizing existing enzymes, bottom-up de novo enzyme design has emerged as a transformative approach for engineering novel enzymes with customized catalytic functions, independent of natural templates
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Enzymatic de novo oligonucleotide synthesis: Emerging techniques and advancements Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-12
Nanfeng Gao, Aimiao Yu, Weikang Yang, Xiandi Zhang, Yue Shen, Xian FuOligonucleotide synthesis serves as a cornerstone of modern life sciences, enabling groundbreaking advancements across molecular diagnostics, therapeutic development, and transformative technologies including DNA data storage and programmable biological systems. While phosphoramidite-based chemical synthesis remains the industrial standard, its limitations in producing long-sequence constructs, cumulative
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Recent advances in chemoenzymatic synthesis of human ABO blood group antigens Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-11
Jing Liu, Xianwei Liu, Wenyuan FangABO blood group antigens (namely, A, B, and H antigens) are carbohydrate epitopes on cell surface that play important roles in biological processes and blood transfusion. The structure diversity of ABH antigens structures is associated with susceptibility to different pathogen infections. Advanced synthetic methodologies are required for studying and applying ABO blood group antigens. The existing
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Sugar phosphatases as biocatalysts for biomanufacturing: Recent advances and applications Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-11
Juanjuan Liu, Guangpeng Xu, Likun Liang, Dongdong MengPhosphatases, the largest subgroup within the haloacid dehydrogenase (HAD) superfamily, catalyze the irreversible dephosphorylation of phosphate biomolecules. In in vitro synthetic enzymatic biosystems, sugar phosphatases drive the pathways of phosphorylation, transformation (isomerization, epimerization, dehydrogenation, and/or transamination), and dephosphorylation towards product formation through
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Enzyme miniaturization: Revolutionizing future biocatalysts Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-10
Ning Ding, Yaoyukun Jiang, Sangsin Lee, Zihao Cheng, Xinchun Ran, Yujing Ding, Robbie Ge, Yifei Zhang, Zhongyue J. YangEnzyme miniaturization offers a transformative approach to overcome limitations posed by the large size of conventional enzymes in industrial, therapeutic, and diagnostic applications. However, the evolutionary optimization of enzymes for activity has not inherently favored compact structures, creating challenges for modern applications requiring smaller catalysts. In this review, we surveyed the advantages
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Polyester-derived monomers as microbial feedstocks: Navigating the landscape of polyester upcycling Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-10
Katerina Foka, Christina Ferousi, Evangelos TopakasSince their large-scale adoption in the early 20th century, plastics have become indispensable to modern life. However, inadequate disposal and recycling methods have led to severe environmental consequences. While traditional end-of-life plastics management had predominantly relied on landfilling, a paradigm shift towards recycling and valorization emerged in the 1970s, leading to the development
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Rich analytic toolbox for the exploration, characterization, screening, and application studies of ω-transaminases Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-09
Guan Zhou, Zewei Zhou, Dandan Feng, Wenrui Fan, Quan Luo, Xuefeng LuOmega-transaminases (ωTAs) constitute an important class of biocatalysts in the pharmaceutical, agrochemical, and fine chemical industries, because of their generally good performance in the efficient, enantiospecific, and environment-friendly synthesis of chiral amines that possess diverse chemical structures and biological activities. However, their practical applications are often hindered by unfavorable
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Myxobacteria: Versatile cell factories of novel commercial enzymes for bio-manufacturing Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-08
Zhoukun Li, Lei Zhang, Xianfeng Ye, Yan Huang, Yanling Ji, Yuezhong Li, Daniel Wall, Zhongli CuiMicrobial cell factories for the production of high-quality commercial-grade enzymes have accelerated the development of advanced bio-manufacturing approaches, which in turn are environmentally friendly and sustainable. Myxobacteria, a term commonly used to refer to a group within the Myxococcota phylum, are of great interest for their biotechnological applications due to their ability to synthesize
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Technological advancement spurs Komagataella phaffii as a next-generation platform for sustainable biomanufacturing Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-06
Le Gao, Jie Yuan, Kai Hong, Nyuk Ling Ma, Shuguang Liu, Xin WuBiomanufacturing stands as a cornerstone of sustainable industrial development, necessitating a shift toward non-food carbon feedstocks to alleviate agricultural resource competition and advance a circular bioeconomy. Methanol, a renewable one‑carbon substrate, has emerged as a pivotal candidate due to its abundance, cost-effectiveness, and high reduction potential, further bolstered by breakthroughs
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Bacteria-microalgae interactions from an evolutionary perspective and their biotechnological significance Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-04
Ahmad Abd-El-Aziz, Sherif M. Elnagdy, Jichang Han, Rok Mihelič, Xulei Wang, Spiros N. Agathos, Jian LiInteractions between bacteria and microalgae have been studied in natural environments and in industrial consortia. As results of co-evolution for millions of years in nature, they have developed complex symbiotic relationships, including mutualism, commensalism and parasitism, the nature of which is decided by mechanisms of the interaction. There are two main types of molecular interactions between
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Tracking inflammation status for improving patient prognosis: A review of current methods, unmet clinical needs and opportunities Biotechnol. Adv. (IF 12.1) Pub Date : 2025-05-03
Vidya Raju, Revanth Reddy, Arzhang Cyrus Javan, Behnam Hajihossainlou, Ralph Weissleder, Anthony Guiseppi-Elie, Katsuo Kurabayashi, Simon A. Jones, Rose T. FaghihInflammation is the body's response to infection, trauma or injury and is activated in a coordinated fashion to ensure the restoration of tissue homeostasis and healthy physiology. This process requires communication between stromal cells resident to the tissue compartment and infiltrating immune cells which is dysregulated in disease. Clinical innovations in patient diagnosis and stratification include
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Guidelines toward ecologically-informed bioprospecting for microbial plastic degradation Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-28
Feng M. Cai, Siqi Jiang, Paul Daly, Mounes Bakhshi, Kai Cartwright, Irina S. DruzhininaBiological degradation of plastics by microbial enzymes offers a sustainable alternative to traditional waste management methods that often pollute the environment. This review explores ecologically-informed bioprospecting for microorganisms possessing enzymes suitable for biological plastic waste treatment. Natural habitats enriched in plastic-like polymers, such as insect-derived polyesters, epicuticular
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A review on the expanding biotechnological frontier of Pedobacter Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-26
Gonçalo Figueiredo, Hugo Osório, Marta V. Mendes, Sónia MendoThe genus Pedobacter consists of Gram-negative bacteria with a broad geographic distribution, isolated from diverse habitats, including water, soil, plants, wood, rocks and animals. However, characterization efforts have been limited to a small number of species. Likewise, in the context of natural products (NP), only a small fraction of Pedobacter -derived NPs have been characterized so far. In contrast
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Selecting optimal algal strains for robust photosynthetic upgrading of biogas under temperate oceanic climates Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-19
Muhammad Nabeel Haider, Linda O'Higgins, Richard O'Shea, Lorraine Archer, David M. Wall, Nikita Verma, María del Rosario Rodero, Muhammad Aamer Mehmood, Jerry D. Murphy, Archishman BoseBiogas generated from anaerobic digestion can be upgraded to biomethane by photosynthetic biogas upgrading, using CO2 as a bioresource for algal (cyanobacteria and microalgae) cultivation. This allows the upgrading technology to offer economic and environmental benefits to conventional physiochemical upgrading techniques (which can be energy-intensive and costly) by co-generating biomethane with high-value
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Metagenomics and plant-microbe symbioses: Microbial community dynamics, functional roles in carbon sequestration, nitrogen transformation, sulfur and phosphorus mobilization for sustainable soil health Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-15
Atif Khurshid Wani, Fayzan Qadir, Noureddine Elboughdiri, Farida Rahayu, Saefudin, Dibyo Pranowo, Chaireni Martasari, Mia Kosmiatin, Cece Suhara, Tri Sudaryono, Yusmani Prayogo, Krishna Kumar Yadav, Khursheed Muzammil, Lienda Bashier Eltayeb, Maha Awjan Alreshidi, Reena SinghBiogeochemical cycles are fundamental processes that regulate the flow of essential elements such as carbon, nitrogen, and phosphorus, sustaining ecosystem productivity and global biogeochemical equilibrium. These cycles are intricately influenced by plant-microbe symbioses, which facilitate nutrient acquisition, organic matter decomposition, and the transformation of soil nutrients. Through mutualistic
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Synthetic biology of Fusarium for the sustainable production of valuable bioproducts Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-11
Rima Gnaim, Rodrigo Ledesma-AmaroSynthetic biology offers transformative opportunities to optimise Fusarium species as efficient platforms for the sustainable production of diverse bioproducts. Advanced engineering techniques, including CRISPR/Cas9, RNA interference and synthetic promoters, have enhanced the manipulation of metabolic pathways, enabling higher yields of industrially relevant compounds. Recent insights from next-generation
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Biotechnological production and emerging applications of betalains: A review Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-09
Mohammad Imtiyaj Khan, Guy PolturakBetalains are food-grade hydrophilic pigments with antioxidant and biological activities, predominantly found in plants. Betanin is a red-violet betalain synthesized from tyrosine through L-DOPA formation, its subsequent aromatic ring-opening, spontaneous cyclization to betalamic acid, and then pH-dependent condensation with i) cyclo‐DOPA-5-O-glucoside or ii) cyclo‐DOPA followed by 5-O-glucosylation
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Fungal ergot alkaloids: Metabolic pathways, biological functions, and advances in synthetic reprogramming Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-07
Wanling Jiang, Xingyu Hou, Guoxiong Peng, Yuxian Xia, Yueqing CaoErgot alkaloids (EAs) are a class of secondary metabolites produced by fungi. These compounds are predominantly synthesized by Ascomycota, with variations in types and biosynthetic pathways among different fungal species. The EA synthesis has minimal impact on the normal growth and development of most EA-producing fungi, but serves as a virulence factor that influences the biocontrol functions of entomopathogenic
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Polyethylene biodegradation: A multifaceted approach Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-02
Anjali Purohit, Bastien Cochereau, Omprakash Sarkar, Ulrika Rova, Paul Christakopoulos, Io Antonopoulou, Silas Villas-Boas, Leonidas MatsakasThe inert nature, durability, low cost, and wide applicability of plastics have made this material indispensable in our lives. This dependency has resulted in a growing number of plastic items, of which a substantial part is disposed in landfills or dumped in the environment, thereby affecting terrestrial and aquatic ecosystems. Among plastic materials, polyolefins are the most abundant and are impervious
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Taking the 3Rs to a higher level: replacement and reduction of animal testing in life sciences in space research Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-01
Mathieu Vinken, Daniela Grimm, Sarah Baatout, Bjorn Baselet, Afshin Beheshti, Markus Braun, Anna Catharina Carstens, James A. Casaletto, Ben Cools, Sylvain V. Costes, Phoebe De Meulemeester, Bartu Doruk, Sara Eyal, Miguel J.S. Ferreira, Silvana Miranda, Christiane Hahn, Sinem Helvacıoğlu Akyüz, Stefan Herbert, Dmitriy Krepkiy, Yannick Lichterfeld, Christian Liemersdorf, Marcus Krüger, Shannon MarchalHuman settlements on the Moon, crewed missions to Mars and space tourism will become a reality in the next few decades. Human presence in space, especially for extended periods of time, will therefore steeply increase. However, despite more than 60 years of spaceflight, the mechanisms underlying the effects of the space environment on human physiology are still not fully understood. Animals, ranging
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Host cell protein-mediated adjuvanticity and immunogenicity risks of biotherapeutics Biotechnol. Adv. (IF 12.1) Pub Date : 2025-04-01
Sherin Panikulam, Hannah Morgan, Michael Gutknecht, Thomas K. Villiger, Nicolas Lebesgue, Anette C. KarleHost cell proteins (HCPs) are process-related impurities of biotherapeutic production that might affect product quality and/or patient safety. In a few cases, adverse events were attributed to HCPs present in the administered biotherapeutic. HCP-associated immune risks include adjuvanticity and immunogenicity with potential cross-reactivity. Based on the published data, some HCPs can act as adjuvants
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Genetic mechanisms, biological function, and biotechnological advance in sorghum tannins research Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-30
Fu Wang, Qian Zhao, Shuyao Li, Ruidong Sun, Zhenyuan Zang, Ai-sheng Xiong, El Hadji Moussa Seck, Yuxin Ye, Jian ZhangSorghum (Sorghum bicolor) holds a unique position in the human diet and serves as a stable food source in many developing countries especially in African and south Asian regions. Tannins, the primary secondary metabolites in sorghum, are pivotal in determining its characteristic bitter taste. Beyond their influence on flavor, tannins play a vital role in sorghum's resistance to biotic and abiotic stresses
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Application of curcuminoids in inflammatory, neurodegenerative and aging conditions - Pharmacological potential and bioengineering approaches to improve efficiency Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-27
Ricardo Lagoa, Logesh Rajan, Cristiana Violante, Smith B. Babiaka, Dorinda Marques-da-Silva, Bhupinder Kapoor, Flávio Reis, Atanas G. AtanasovCurcumin, a natural compound found in turmeric, has shown promise in treating brain-related diseases and conditions associated with aging. Curcumin has shown multiple anti-inflammatory and brain-protective effects, but its clinical use is limited by challenges like poor absorption, specificity and delivery to the right tissues.
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Advances in antimicrobial peptides: From mechanistic insights to chemical modifications Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-26
Ren Yang, Xiaohan Ma, Feng Peng, Jin Wen, Latifa W. Allahou, Gareth R. Williams, Jonathan C. Knowles, Alessandro PomaThis review provides a comprehensive analysis of antimicrobial peptides (AMPs), exploring their diverse sources, secondary structures, and unique characteristics. The review explores into the mechanisms underlying the antibacterial, immunomodulatory effects, antiviral, antiparasitic and antitumour of AMPs. Furthermore, it discusses the three principal synthesis pathways for AMPs and assesses their
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Advances in gene editing-led route for hybrid breeding in crops Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-26
Muhammad Jawad Akbar Awan, Muhammad Awais Farooq, Muhammad Ismail Buzdar, Asma Zia, Aiman Ehsan, Muhammad Abu Bakar Waqas, Goetz Hensel, Imran Amin, Shahid MansoorWith the global demand for sustainable agriculture on the rise, RNA-guided nuclease technology offers transformative applications in crop breeding. Traditional hybrid breeding methods, like three-line and two-line systems, are often labor-intensive, transgenic, and economically burdensome. While chemical mutagens facilitate these systems, they not only generate weak alleles but also produce strong
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Hydroxybenzoic acids: Microbial metabolism, pathway engineering and products Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-26
Ingrida Kutraite, Ernesta Augustiniene, Naglis MalysHydroxybenzoic acids (HBAs) are plant secondary metabolites exhibiting antioxidant, antiviral, anticancer and antibacterial activities. A high and constantly increasing demand for these compounds underlines the need for novel and efficient production methods, as commonly applied plant extraction and chemical synthesis approaches are susceptible to low yields and are environmentally hazardous. Switching
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Antimicrobial peptides in nematode secretions – Unveiling biotechnological opportunities for therapeutics and beyond Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-26
E.I. Sutcliffe, A. Irvine, J. Rooney, D. Smith, H.M. Northcote, D. McKenzie, S. Bakshi, A.J. Nisbet, D. Price, R. Graham, R. Morphew, L. Atkinson, A. Mousley, C. CantacessiGastrointestinal (GI) parasitic nematodes threaten food security and affect human health and animal welfare globally. Current anthelmintics for use in humans and livestock are challenged by continuous re-infections and the emergence and spread of multidrug resistance, underscoring an urgent need to identify novel control targets for therapeutic exploitation. Recent evidence has highlighted the occurrence
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Systems biology of Haemonchus contortus – Advancing biotechnology for parasitic nematode control Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-22
Yuanting Zheng, Neil D. Young, Tao Wang, Bill C.H. Chang, Jiangning Song, Robin B. GasserParasitic nematodes represent a substantial global burden, impacting animal health, agriculture and economies worldwide. Of these worms, Haemonchus contortus – a blood-feeding nematode of ruminants – is a major pathogen and a model for molecular and applied parasitology research. This review synthesises some key advances in understanding the molecular biology, genetic diversity and host-parasite interactions
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Enzymatic polymerization: Recent advances toward sustainable polymer synthesis Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-19
Bo Xia, Honghao Chen, Juntao Wang, Yan Liu, Qi Wu, Xiaocheng PanEnzymatic polymerization has emerged as a sustainable strategy for synthesizing biodegradable, biocompatible polymers, addressing critical environmental challenges posed by conventional petroleum-based materials. This review comprehensively explores advancements from the past five years, spotlighting six pivotal enzymes lipase, horseradish peroxidase, laccase, glucose oxidase, glucosyltransferase,
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Effect of nanomaterials on microbial metabolism and their applications in fermentative hydrogen production: A review Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-19
Yanjing Li, Minmin Wang, Qiushi Jiang, Sihu Zhang, Xueying Yang, Wen Cao, Wenwen Wei, Liejin GuoRecent developments in nanomaterial-microbe hybrid systems have combined the unique physicochemical properties of nanomaterials with the biocatalytic capabilities of microorganisms. These hybrid systems have seen extensive use in energy production, particularly in enhancing hydrogen generation. Researchers have incorporated nanomaterials into microbial cultures, achieving significant improvements in
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Mechanism and improvement of yeast tolerance to biomass-derived inhibitors: A review Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-17
Jinling Yu, Cuili Li, Yajie Cheng, Shaobo Guo, Hongzhao Lu, Xiuchao Xie, Hao Ji, Yanming QiaoLignocellulosic biomass is regarded as a potentially valuable second-generation biorefinery feedstock. Yeast has the ability to metabolize this substrate and convert it into fuel ethanol and an array of other chemical products. Nevertheless, during the pretreatment of lignocellulosic biomass, inhibitors (furanaldehydes, carboxylic acids, phenolic compounds, etc.) are generated, which impede the growth
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Self-replicating nanomaterials as a new generation of smart nanostructures Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-17
Akbar Hasanzadeh, Sara Saeedi, Lida Dastanpour, Zahra S. Biabanaki, Leili Asadi, Hamid Noori, Michael R. Hamblin, Yong Liu, Mahdi KarimiSelf-replication is the process by which a system or entity autonomously reproduces or generates copies of itself, transmitting hereditary information through its molecular structure. Self-replication can be attractive for various researchers, ranging from biologists focused on uncovering the origin of life, to synthetic chemists and nanotechnologists studying synthetic machines and nanorobots. The
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Re-imagining human cell culture media: Challenges, innovations, and future directions Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-16
Akila Wijerathna-Yapa, Kathy Sharon Isaac, Michelle Combe, Samuel Hume, Stanislav SokolenkoThe development of optimized culture media is pivotal to advancements in human cell culture, underpinning progress in regenerative medicine, cell therapies, and personalized medicine. While foundational formulations like Eagle's Minimum Essential Medium (MEM) and Dulbecco's Modified Eagle Medium (DMEM) have historically enabled significant biological research, these media were primarily designed for
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Recent advances in the application of CRISPR/Cas-based gene editing technology in Filamentous Fungi Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-12
Xu-Hong Li, Hui-Zhi Lu, Ji-Bao Yao, Chi Zhang, Tian-Qiong Shi, He HuangFilamentous fungi are essential industrial microorganisms that can serve as sources of enzymes, organic acids, terpenoids, and other bioactive compounds with significant applications in food, medicine, and agriculture. However, the underdevelopment of gene editing tools limits the full exploitation of filamentous fungi, which still present numerous untapped potential applications. In recent years,
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Recent advances in CRISPR-Cas system for Saccharomyces cerevisiae engineering Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-11
Xinxin Wu, Xiaowen Wan, Hongbin Yu, Huayi LiuYeast Saccharomyces cerevisiae (S. cerevisiae) is a crucial industrial platform for producing a wide range of chemicals, fuels, pharmaceuticals, and nutraceutical ingredients. It is also commonly used as a model organism for fundamental research. In recent years, the CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated proteins) system has become the preferred technology
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Genetic manipulations of brassinosteroid-related genes improve various agronomic traits and yield in cereals enabling new biotechnological revolution: Achievements and perspectives Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-11
Karolina Zolkiewicz, Sunny Ahmar, Damian GruszkaBrassinosteroids (BRs) are steroid phytohormones which regulate various developmental and physiological processes throughout plant life cycle, from seed development and germination, up to modulation of reproduction and senescence. Importantly, mutants defective in the BR biosynthesis or response show various degree of plant height reduction (dwarfism or semi-dwarfism). This agronomic trait is of particular
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Multiplexed engineering of cytochrome P450 enzymes for promoting terpenoid synthesis in Saccharomyces cerevisiae cell factories: A review Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-09
Jiaheng Liu, Yangyang Li, Xianhao Xu, Yaokang Wu, Yanfeng Liu, Jianghua Li, Guocheng Du, Jian Chen, Xueqin Lv, Long LiuTerpenoids, also known as isoprenoids, represent the largest and most structurally diverse family of natural products, and their biosynthesis is closely related to cytochrome P450 enzymes (P450s). Given the limitations of direct extraction from natural resources, such as low productivity and environmental concerns, heterologous expression of P450s in microbial cell factories has emerged as a promising
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Mapping the architecture of animal toxin systems by mass spectrometry imaging Biotechnol. Adv. (IF 12.1) Pub Date : 2025-03-04
Maik Damm, Andreas Vilcinskas, Tim LüddeckeAnimal toxins are proteins, peptides or metabolites that cause negative effects against predators, prey or competitors following contact or injection. They work by interacting with enzymes, receptors and other targets causing pain, debilitation or leading even to death. Their biological significance and pharmacological effects in humans make them interesting to researchers, but much remains to be learned
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Bioinformatics assisted construction of the link between biosynthetic gene clusters and secondary metabolites in fungi Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-28
Hua-Wei Lv, Jia-Gui Tang, Bin Wei, Meng-Di Zhu, Hua-Wei Zhang, Zhong-Bo Zhou, Bo-Yi Fan, Hong Wang, Xing-Nuo LiFungal secondary metabolites are considered as important resources for drug discovery. Despite various methods being employed to facilitate the discovery of new fungal secondary metabolites, the trend of identifying novel secondary metabolites from fungi is inevitably slowing down. Under laboratory conditions, the majority of biosynthetic gene clusters, which store information for secondary metabolites
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Exploring biotechnology for plastic recycling, degradation and upcycling for a sustainable future Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-28
Xu Liu, Helen Park, Yannic Sebastian Ackermann, Luc Avérous, Hendrik Ballerstedt, Werner Besenmatter, Blas Blázquez, Uwe T. Bornscheuer, Yannick Branson, William Casey, Víctor de Lorenzo, Weiliang Dong, Tilman Floehr, Manuel S. Godoy, Yu Ji, Andreas Jupke, Jürgen Klankermayer, David San León, Luo Liu, Xianrui Liu, Yizhi Liu, Maria T. Manoli, Esteban Martínez-García, Tanja Narancic, Juan Nogales, KevinThe persistent demand for plastic commodities, inadequate recycling infrastructure, and pervasive environmental contamination due to plastic waste present a formidable global challenge. Recycling, degradation and upcycling are the three most important ways to solve the problem of plastic pollution. Sequential enzymatic and microbial degradation of mechanically and chemically pre-treated plastic waste
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Expanding the cryoprotectant toolbox in biomedicine by multifunctional antifreeze peptides Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-27
Shiva HemmatiThe global cryopreservation market size rises exponentially due to increased demand for cell therapy-based products, assisted reproductive technology, and organ transplantation. Cryoprotectants (CPAs) are required to reduce ice-related damage, osmotic cell injury, and protein denaturation. Antioxidants are needed to hamper membrane lipid peroxidation under freezing stress, and antibiotics are added
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Targeted delivery systems of siRNA based on ionizable lipid nanoparticles and cationic polymer vectors Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-25
Ziying Yao, Taiqing Liu, Jingwen Wang, Yunhai Fu, Jinhua Zhao, Xiaoyu Wang, Yinqi Li, Xiaodong Yang, Zhiyao HeAs an emerging therapeutic tool, small interfering RNA (siRNA) had the capability to down-regulate nearly all human mRNAs via sequence-specific gene silencing. Numerous studies have demonstrated the substantial potential of siRNA in the treatment of broad classes of diseases. With the discovery and development of various delivery systems and chemical modifications, six siRNA-based drugs have been approved
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Biosynthesis and bioactivities of triterpenoids from Centella asiatica: Challenges and opportunities Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-18
Weizhu Zeng, Hongbiao Li, Shike Liu, Zhengshan Luo, Jian Chen, Jingwen ZhouCentella asiatica (L.) Urban is an herbaceous perennial plant that has long been widely used in traditional medicine, due to its diverse wound-healing, neuroprotection, antioxidant and anti-inflammatory properties. The major functional bioactive secondary metabolites are the triterpenoids asiatic acid, madecassic acid, asiaticoside and madecassoside, collectively known as centellosides. Current extraction
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Alpha-ketoacid decarboxylases: Diversity, structures, reaction mechanisms, and applications for biomanufacturing of platform chemicals and fuels Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-13
Khanh Ha, Seunghyun Ryu, Cong T. TrinhIn living cells, alpha-ketoacid decarboxylases (KDCs, EC 4.1.1.-) are a class of enzymes that convert alpha-ketoacids into aldehydes through decarboxylation. These aldehydes serve as either drop-in chemicals or precursors for the biosynthesis of alcohols, carboxylic acids, esters, and alkanes. These compounds play crucial roles in cellular metabolism and fitness and the bioeconomy, facilitating the
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Chimeric enzymes in the pulp and paper making industry: Current developments Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-09
Abdullah Arsalan, Yuvaraj Ravikumar, Xinrui Tang, Zijing Cao, Mei Zhao, Wenjing Sun, Xianghui QiThe pulp and paper (P&P) industry plays a vital role in supporting the social and economic progress of a country by supplying essential commodities. Conventional P&P processing often consumes significant energy and use chemical agents to produce hazardous intermediates. The use of enzymes in the P&P industry has significantly reduced both the chemical and energy demands during processing. A variety
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Post-translational assembly of multi-functional antibody Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-08
Baizhen Gao, Qing SunThe advent of multi-specific antibodies has introduced a significant advantage over traditional monoclonal antibody therapeutics by engaging multiple targets and pathways. This review delves into the post-translational assembly techniques for multi-specific antibodies, highlighting the innovations and challenges associated with approaches of chemical conjugation, oligonucleotide-mediated assembly,
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Computational advances in biosynthetic gene cluster discovery and prediction Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-07
Sisi Zhu, Hongquan Xu, Yuhong Liu, Yanfeng Hong, Haowen Yang, Changli Zhou, Lin TaoBiosynthetic gene clusters (BGCs) are groups of clustered genes found in bacteria, fungi, and some plants and animals that are crucial for synthesizing secondary metabolites. In recent years, genome mining of BGCs has emerged as a prominent research focus, particularly in natural product discovery and drug development. Compared to traditional experimental methods, applying computational techniques
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Polyhydroxyalkanoates production from microalgae for sustainable bioplastics: A review Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-06
Syarifa Ilhami, Siti Nur Syaza Abdul Rahman, Muhammad Iqhrammullah, Zhafran Hamid, Yee Ho Chai, Man Kee LamMicroalgae have emerged as a promising and sustainable source for polyhydroxyalkanoates (PHA), which are increasingly recognized for their potential in bioplastics production. However, the widespread application of microalgae-derived PHA faces challenges related to economic feasibility and scalability. This review provides a comprehensive analysis of recent advancements in the cultivation and optimization
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Heparin and heparin-like modifications in hemodialysis membranes: Current innovations and future directions Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-06
Putu Teta Prihartini Aryanti, Febrianto Adi Nugroho, Yudith Yunia KusmalaHeparinized hemodialysis membranes represent a significant advancement in improving the biocompatibility and anticoagulant properties of dialysis treatments. This review explores the current challenges and innovations in developing these membranes, focusing on the incorporation of heparin and heparin-like substances to reduce protein adsorption, platelet adhesion, and clot formation. The methods for
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Unleashing the potential of microbial biosynthesis of monoterpenes via enzyme and metabolic engineering Biotechnol. Adv. (IF 12.1) Pub Date : 2025-02-05
Dianqi Yang, Hong Liang, Xuxu Li, Chenyu Zhang, Zewei Lu, Xiaoqiang MaMonoterpenes (MTPs) are valuable isoprenoids widely used in cosmetics, food flavorings, pharmaceuticals, etc. Compared to plant extraction and chemical synthesis, microbial biosynthesis offers superior sustainability and efficiency in producing natural MTPs, overcoming the limitations of raw material dependency, environmental impact, and racemic mixtures inherent in these methods. This review comprehensively