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Respiratory Transmission Potential of Severe Fever with Thrombocytopenia Syndrome Bunyavirus: Evidence from Intranasal Exposure in a Humanized Mouse Model Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-23
Dafeng Lu, Yifang Han, Ruowei Xu, Chunfang Wang, Mingke Qin, Jianwei Shi, Fuqiang Ye, Jinhai Zhang, Zhenghan Luo, Yuhe Wang, Hong Lin, Peiqi Jia, Jin Zhu, Chunhui WangSevere Fever with Thrombocytopenia Syndrome Bunyavirus (SFTSV) is a highly lethal pathogen with expanding endemic regions in Asia. While primarily transmitted by ticks, recent evidence suggests potential airborne transmission, raising significant public health concerns. This study investigates the potential for respiratory transmission and pathogenesis using humanized NCG mice inoculated with SFTSV
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Identification of Clonorchis sinensis in Bronchoalveolar Lavage Fluid and Peripheral Blood Using Next-Generation Sequencing in a Patient with Septic Shock: a Case Report and Literature Review Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-23
Weipeng Liu, Mengting Su, Dongjing Zhang, Siqi Liu, Yin Zhang, Zhengfei YangSummaryWe present a case report of a 59-year-old male diagnosed with pancreatic cancer with multiple abdominal metastases, in whom metagenomic next-generation sequencing unexpectedly identified Clonorchis sinensis genomic sequences in both bronchoalveolar lavage fluid and peripheral blood specimens. Subsequent examination further confirmed the presence of viable C. sinensis eggs in the stool samples
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Pathogenicity and transmissibility of bovine-derived HPAI H5N1 B3.13 virus in pigs Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-21
Taeyong Kwon, Jessie D. Trujillo, Mariano Carossino, Heather M. Machkovech, Konner Cool, Eu Lim Lyoo, Gagandeep Singh, Sujan Kafle, Shanmugasundaram Elango, Govindsamy Vediyappan, Wanting Wei, Nicholas Minor, Franco S. Matias-Ferreyra, Igor Morozov, Natasha N. Gaudreault, Udeni B. R. Balasuriya, Lisa Hensley, Diego G. Diel, Wenjun Ma, Thomas C. Friedrich, Juergen A. Richt -
DNA methylation in macrophages infected with Leishmania spp. in different culture conditions Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-21
Eleonora Loi, Paola Andrea Barroso, Agustín Moya Alvarez, Patrizia Zavattari, Ana Florencia Vega BenedettiLeishmania modulate the host cell epigenome, including DNA methylation. This work aimed to explore the DNA methylation pattern in infected macrophages with L. (Viannia) braziliensis, L. (Leishmania) amazonensis and L. (L.) infantum. We performed a genome-wide methylation analysis in macrophages, cultured in presence/absence of interleukin 6 (IL-6) and infected with the three species for a period of
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The cyclase-associated protein contributes to antifungal susceptibility and virulence in Aspergillus fumigatus Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-21
Xinyu Yang, Qian Wang, Binghan Xiao, Qiqi Wang, Weiwei Deng, Nir Osherov, Ruoyu Li, Wei LiuABSTRACTAspergillus fumigatus is the most prevalent pathogenic mould that contributes to high morbidity and mortality in immunocompromised patients. Here, we characterized the functions of the cyclase-associated protein (CAP) in A. fumigatus. To study the role of CAP in virulence and antifungal susceptibility of A. fumigatus, CAP gene knockout strain (△CAP) and complemented strain (R-△CAP) were constructed
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Characterization of emerging H3N3 avian influenza viruses in poultry in China Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-20
Cheng Yan, Jianzhong Shi, Pengfei Cui, Yuan Chen, Congcong Wang, Yan Wang, Jiahao Miao, Yaping Zhang, Huihui Kong, Xianying Zeng, Guobin Tian, Chengjun Li, Yasuo Suzuki, Guohua Deng, Hualan ChenAvian influenza viruses continue to challenge poultry and human health; therefore, careful surveillance and evaluation of emerging viruses are important for animal disease control and human influenza pandemic preparedness. In this study, we detected a series of H3N3 subtype avian influenza viruses in chickens, pigeons, and ducks during our routine surveillance and diagnosis between September 2022 and
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Characterization of monkeypox virus clade IIb lineage B1 strains in animal models: insights into virulence Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-19
Lorenz Ulrich, Kore Schlottau, Ann Kathrin Ahrens, Nico Joel Halwe, Jacob Schön, Joachim Jakob Bugert, Daniel Bourquain, Andreas Nitsche, Martin Beer, Donata Hoffmann -
Association between baseline HIV-1 DNA levels and clinical outcomes in people living with HIV: a meta-analysis of cohort studies Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-19
Fei Zhao, Defu Yuan, Shanshan Liu, Yangyang Liu, Hongxia Yan, Lifeng Liu, Li Li, Christiane Moog, Bei Wang, Bin SuTo assess the prognostic value of baseline HIV-1 DNA levels, a meta-analysis was conducted according to the PROSPERO protocol (CRD42024619050) based on data from studies published until March 4, 2025. Relevant studies were retrieved from the Web of Science, PubMed, Cochrane Library, Embase, and Scopus databases. Effect sizes (correlation coefficients, odds ratios [ORs], hazard ratios [HRs], and adjusted
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Gene-modified genotype II live attenuated African swine fever virus induces cross-protection against genotype I but not against genotype IX Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-12
Anusyah Rathakrishnan, Johanneke D. Hemmink, Vlad Petrovan, Ana Luisa Reis, Linda K. DixonAfrican swine fever virus originated in a wildlife cycle in East Africa and spread to domestic pigs. At least twenty-three genotypes are present in Africa whereas only genotypes I and II have spread to other continents. Vaccine development has been directed mainly to genotype II. The ability of genotype II vaccines to induce cross-protection against other genotypes is unknown. Here, we compared cross-protection
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Clade 2.3.4.4b highly pathogenic H5N1 influenza viruses from birds in China replicate effectively in bovine cells and pose potential public health risk Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-12
Junlong Xiong, Shiping Ding, Jiangtao Zhou, Yunqi Cui, Xiaona Chen, Lihong Huang, Jiahao Zhang, Wenbao Qi, Ming LiaoIn February 2024, H5N1 highly pathogenic avian influenza viruses (HPAIVs) of clade 2.3.4.4b were first reported in dairy cows in the USA. Subsequent multiple outbreaks on dairy farms and sporadic human infections have raised substantial public health concerns. In the same year, four H5N1 HPAIVs of clade 2.3.4.4b were isolated from ducks and geese in live poultry markets (LPMs) spanning seven provinces
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Scarless excision of an insertion sequence in the OmpK36 promoter restores meropenem susceptibility in a non-carbapenemase-producing Klebsiella pneumoniae Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-09
Yingying Du, Tong Liu, Yuanzhi Gong, Yinghua Yuan, Yunlou Zhu, Min Hao, Yuhao Liu, Sheng WangCarbapenem-resistant Klebsiella pneumoniae (CRKP) poses a significant global health challenge due to its limited treatment options and high mortality rates. Meanwhile, the prevalence of non-carbapenemase-producing CRKP (NC-CRKP) strains is increasing, but their resistance mechanisms remain less understood compared to those of carbapenemase-producing CRKP (CP-CRKP). In this study, KP-469, an NC-CRKP
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Effect of mosquito saliva from distinct species on human dermal endothelial cell function in vitro and West Nile virus pathogenesis in vivo Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-06
Imke Visser, Vincent Vaes, Peter van Run, Eleanor M. Marshall, Lars Vermaat, Charlotte Linthout, Dick H.W. Dekkers, Jeroen A.A. Demmers, Marion P.G. Koopmans, Constantianus J.M. Koenraadt, Melanie Rissmann, Barry Rockx -
Efficacy and safety of a novel short course rifapentine and isoniazid regimen for the preventive treatment of tuberculosis in Chinese silicosis patients: a pilot study (SCRIPT-TB) Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-06
Qiao-Ling Ruan, Qing-Luan Yang, Chun-Lian Ma, Miao-Yao Lin, Xi-Tian Huang, Ya-Pin Mao, Ji-Mei Gao, Jin-Ju Li, Xia-Ning Zhang, Zhi-Xiang You, Quan-Qing Zheng, Yan-Fei Ren, Xue-Feng Liu, Ling-Yun Shao, Wen-Hong ZhangBACKGROUND Tuberculosis preventive treatment (TPT) is essential for the end TB Strategy, but shorter and better tolerated regimens are needed to boost its coverage and acceptance. METHODS Silicosis patients aged 18 to 65 years received a novel 1H3P3 regimen (400 mg isoniazid and 450 mg rifapentine, thrice-weekly for 4 weeks) under direct observation and were actively followed up for 3 years. The safety
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Unique phenomenon of H5 highly pathogenic avian influenza virus in China: co-circulation of Clade 2.3.4.4b H5N1 and H5N6 results in diversity of H5 Virus Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-06
Xinkui Zhang, Yujia Yang, Xinyu Han, Dandan Wei, Beibei Niu, Qiuhong Huang, Yan Li, Huifang Yin, Xianpeng Zhang, Ming Liao, Weixin JiaRecently, Clade 2.3.4.4b H5N1 virus has been widely prevalent globally. Although no outbreaks of Avian Influenza have occurred in poultry in China recently, Clade 2.3.4.4b H5 virus can still be isolated from wild birds, live poultry markets and environment, indicating the ongoing co-circulation of H5N1 and H5N6 viruses. In this study, phylogenetic analysis of global Clade 2.3.4.4b viruses and 20 laboratory-isolated
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Enhanced variant neutralization through glycan masking of SARS-CoV-2 XBB1.5 RBD Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-06
Joey Olivier, Charlotte George, Chloe Qingzhou Huang, Sneha B. Sujit, Paul Tonks, Diego Cantoni, Joe Grove, Laura O’Reilly, Johannes Geiger, Christian Dohmen, Verena Mummert, Anne Rosalind Samuel, Christian Plank, Rebecca Kinsley, Nigel Temperton, Martina Pfranger, Ralf Wagner, Jonathan L. Heeney, Sneha Vishwanath, George W. CarnellSARS-CoV-2 continues to evolve antigenically under the immune pressure exerted by both natural infection and vaccination. As new variants emerge, we face the recurring challenge of updating vaccines at significant financial cost to maintain their efficacy. To address this, novel strategies are needed to enhance the breadth of protection offered by vaccines or, at a minimum, extend their effectiveness
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New Onset of Type 1 and Type 2 Diabetes Post-COVID-19 Infection: A Systematic Review Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-06
Ahmed El-Naas, Omar Hamad, Siddhant Nair, Bushra Alfakhri, Shadi Mahmoud, Aliyaa Haji, Lina Ahmed, Ahamed Lebbe, Ali Aboulwafa, Farha Shaikh, Imane Bouhali, Dalia ZakariaAbstractCOVID-19 may primarily cause respiratory symptoms but can lead to long-term effects known as long COVID. COVID-19-induced diabetes mellitus was reported in many patients which shares characteristics of types 1 and 2 (T1DM and T2DM). This study aims to identify and analyze the reported cases of new onset diabetes post-COVID-19 infection. Several databases were used to conduct a comprehensive
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CircMYO9A inhibits influenza A virus replication by dampening haemagglutinin cleavage via increasing SERPINE1/PAI-1 expression Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-02
Yiqing Zheng, Xiaoting Zhang, Zhiyuan Liu, Menglu Fan, Lulu Deng, Jihui PingCircular RNAs (circRNAs) represent a class of widespread and diverse covalently closed circular endogenous RNAs that play critical roles in regulating gene expression in mammals. However, the roles and regulatory mechanisms of circRNAs during influenza A virus (IAV) infection remain largely unexplored. In this study, we screened the circRNA transcription profiles of WSN-infected cells to identify circRNAs
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Genetic diversity and expanded epidemic area of novel tick-borne pathogen wetland virus in ticks, wild and domestic animals, and patient in China Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-02
Hong-Xia Yuan, Xiao-Long Lv, Mei-Qi Zhang, Guang-Qian Si, Zhi-Jun Zhao, Xiao-Hu Han, Zhi-Jun Hou, Ning Cui, Lei Zhang, Yi-Dan Ma, Si-Qian Wu, Xin Yang, Han-Zheng Mu, Cong Peng, Ming Chen, Peng-Tao Bao, Hao Li, Shu-Zhen Han, Xiao-Ai Zhang, Wei LiuWetland virus (WELV) is a recently identified segmented orthonairovirus associated with human febrile illness in northeastern China. To elucidate its ecological drivers and transmission patterns, we conducted multi-host surveillance in seven eco-climate regions across China through an integrated approach combining molecular and serological profiling. Over 33,000 questing and feeding ticks representing
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A machine learning model for mortality prediction in patients with severe fever with thrombocytopenia syndrome: A prospective, multicenter cohort study Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-05-01
Yanan Liu, Lei Fan, Wencai Wang, Hongxuan Song, Zhenghua Zhang, Qian Liu, Zhongji Meng, Shibo Li, Hua Wang, Shijun Zhou, Wanjun Liu, Guomei Xia, Jianping Duan, Chunxia Guo, Lu Wang, Ling Xu, Tong Wang, Hanxin Li, Xinyue Zhang, Tiandan Xiang, Di Liu, Zujiang Yu, Yuliang Liu, Junzhong Wang, Xin ZhengSevere fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease that imposes a considerable medical burden. In this study, we enrolled 1,606 SFTS patients, developed and validated machine learning models for mortality prediction, and ultimately constructed a model consisting of six variables. The prediction model, UNION-SFTS, constructed using the multilayer perceptron (MLP) algorithm
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Genomic epidemiology and antifungal resistance of emerging Trichophyton indotineae in China Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-28
Wenting Xie, Guanzhao Liang, Xue Kong, Clement K. M. Tsui, Xiaodong She, Weida Liu, Xiaofang LiThe emergence and spread of antifungal-resistant Trichophyton indotineae pose an increasing public health concern worldwide. Multidrug-resistant T. indotineae infections have been reported in China in the past few years. To understand the genetic relationship and the origin of these Chinese isolates, as well as their relationship to the global collections, we sequenced the whole genomes of 31 isolates
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Epidemiology and evolutionary dynamics of H9N2 avian influenza virus in Bangladesh Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-24
Ariful Islam, Emama Amin, Md Arif Khan, Monjurul Islam, Suman Das Gupta, Josefina Abedin, Mohammed Ziaur Rahman, Jade K. Forwood, Mohammed Enayet Hosaain, Tahmina ShirinLow pathogenicity avian influenza (LPAI) H9N2 has been enzootic in Bangladeshi poultry since 2006. H9N2 outbreaks can decrease egg production and growth and pose a risk to human health. The role of avian hosts in the persistence, evolution, and dispersion of H9N2 is poorly understood in Bangladesh. Hence, this study unveils the intricate role of major host species in virus maintenance and evolution
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Risk assessment of 2024 cattle H5N1 using age-stratified serosurveillance data Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-22
Lin-Lei Chen, Xiaojuan Zhang, Kang Zhang, Brian Pui-Chun Chan, Jacqueline Kwan Yuk Yuen, Kwok-Yung Yuen, Pui Wang, Yuhe R. Yang, Honglin Chen, Kelvin Kai-Wang ToThe highly pathogenic avian influenza virus A(H5N1) clade 2.3.4.4b has caused a human outbreak in North America since March 2024. Here, we conducted a serosurveillance study to determine the risk of A(H5N1) clade 2.3.4.4b (2024 cattle H5N1) to general population. In the initial screening of 180 serum specimens encompassing all age groups, 2.2% (4/180) had detectable neutralizing antibody (nAb) titres
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Prevalence and treatment outcomes of latent tuberculosis infection among older patients with chronic obstructive pulmonary disease in an area with intermediate tuberculosis burden Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-22
Hung-Ling Huang, Meng-Hsuan Cheng, Meng-Rui Lee, Jung-Yien Chien, Po-Liang Lu, Chau-Chyun Sheu, Jann-Yuan Wang, Inn-Wen Chong, Jinn-Moon Yang, Wei-Chang HuangABSTRACTChronic obstructive pulmonary disease (COPD) and aging both increase the risk of tuberculosis (TB), an important infectious disease in human. Exploring the burden and predictors of latent tuberculosis infection (LTBI) and treatment outcomes for older individuals with COPD is essential to guide LTBI intervention policy. We enrolled patients aged over 60 years with COPD between January 2021 and
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The performance of computer-aided detection for chest radiography in tuberculosis screening: a population-based retrospective cohort study Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-22
Henan Xin, Wei Wang, Xiaomeng Wang, Juanjuan Huang, Yuanzhi Di, Jiang Du, Xuefang Cao, Boxuan Feng, Lingyu Shen, Yijun He, Tonglei Guo, Zihan Li, Jianguo Liang, Zhen Wang, Ping Zhu, Lei GaoFrom 2020 to 2022, a pulmonary tuberculosis (PTB) active case finding project based on chest X-ray (CXR) examination was conducted targeting individuals aged ≥65 years old in Jiangshan County, Quzhou City. The current study used computer-aided detection (CAD) software (JF CXR-1 v2) to retrospectively analyze the CXR images and to estimate its potential capacity for identifying PTB cases. The information
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Nuclear shuttling of CDC4 mediated broad-spectrum antiviral activity against diverse coronaviruses Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-22
Mingwei Li, Yang Wu, Jin Tian, Qian Yang, Mingze Gao, Yongrui Wang, Xuepeng Wang, Ju Zhang, Yudi Pan, Hongyan Shi, Da Shi, Xin Zhang, Jianfei Chen, Longjun Guo, Li FengPandemics of coronavirus (CoV)-related infection have been a major issue since the outbreaks of SARS, MERS and COVID-2019 in the past decades, leading a substantial threat to public health. Porcine deltacoronavirus (PDCoV), a new swine coronavirus, causes enteropathogenic disease characterized by acute diarrhoea, vomiting and dehydration in suckling piglets and poses potential risks of cross-species
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A tombus-like virus in patients with lower respiratory tract infection: an observational study based on meta-transcriptomic sequencing Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-16
Run-Ze Ye, Jia-Qi Zhao, Hui Xie, Lin Zhao, Cheng Gong, Zhen-Fei Wang, Ning Yue, Luo-Yuan Xia, Ke Song, Bao Dong, Ning Wang, Wan-Ying Gao, Yu-Yu Li, Xiao-Ming Cui, Jiao-Jiao Pang, De-Dong Ma, Hao Wang, Jia-Fu Jiang, Yule Liu, Ye Feng, Na Jia, Wen-Qing Sun, Xiao-Peng Qi, Lu-Tao Du, Yuguo Chen, Tao Jiang, Fang Huang, Wu-Chun CaoThe identification of a novel virus related to the family Tombusviridae, provisionally named human tombus-like virus (hTLV), is significant in the context of ongoing surveillance for respiratory pathogens. Meta-transcriptomic sequencing was utilized to detect respiratory pathogens in patients with lower respiratory tract infections (LRIs) in Jinan, China, from 2022 to 2023. The additional hTLV infections
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Proteins of the SubB family provide multiple mechanisms of serum resistance in Yersinia pestis Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-16
François Pierre, Alexandre Baillez, Amélie Dewitte, Agustin Rolandelli, Florent SebbaneThe serum complement system is a cornerstone element of the innate immune response. Bacterial resistance to this system is a multifaceted process involving various proteins and molecular mechanisms. Here, we report several genes required for the growth of Yersinia pestis in serum. Among them, we found that ypo0337 encodes an outer-membrane-associated lectin that recruits factor H, C4BP and hemopexin
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Development and validation of a new mpox virus sequencing and bioinformatic analysis pipeline Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-15
Missiani Ochwoto, Skyler Kuhn, Paul Schaughency, Ben Greene, Kailin Hawes, Felix Koukouikila-Koussounda, Reiche Golmard Elenga, Dachel Aymard Eyenet Boussam, Pembe Issamou Mayangue, Jonathan Schulz, Craig Martens, Fabien Roch Niama, Justin Lack, Ryan F. Relich, Vincent J. Munster, Claude Kwe YindaSequencing and bioinformatic analysis of mpox virus (MPXV) remain challenging in resource-limited settings. We developed and validated a PCR-based sequencing assay that targets a 12.5 kilobase (kb) region that is phylogenetically representative of the whole ∼ 200 kb MPXV genome. We combined this sequencing assay with a lightweight, downloadable, on-and-off-grid-bioinformatics pipeline for rapid phylogenetic
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Spatio-temporal distribution of dengue cases and vectors along with the interrelationship of environmental and climatic factors in the metropolitan city, Kolkata, India, for 2017–2022: calling implications for vector control Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-15
Sasmita Rani Jena, C. Elanchezhiyan, Avik Kumar Sam, Ujjal Gogoi, Varun Shende, Srimoyee Basu, Saikat Bandyopadhyay, Bithika Mandal, Baishakhi Biswas, Atanu Banerjee, Kalpana Baruah, Harish C. Phuleria, Ipsita Pal BhowmickWe studied the spatio-temporal distribution of dengue at the micro-scale, along with other important factors for disease transmission, like vector prevalence, seasonality, breeding behaviour, entomological indices, and its relation with environmental and climatic factors in Kolkata, one of the most populous metropolitan cities in India, facing dengue upsurge in recent years. We analysed dengue data
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Triatoma rubrofasciata as a potential vector for bartonellosis Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-15
Peichao Deng, Binglian Qin, Anli Liang, Qingan Zhou, Xiaoyin Fu, Xiaoquan Liu, Chenghui Lao, Xiaoqin Li, Shanshan He, Lili Tang, Ziwen Zhao, Wenjie Chen, Dengyu Liu, Yanwen Li, Yunliang ShiBartonella spp. are most often transmitted by arthropod vectors or animal bites and scratches. However, the vector species involved in the transmission of human bartonellosis remain poorly understood. This study investigated the presence of Bartonella in Triatoma rubrofasciata from Guangxi and Hainan provinces in China, evaluating its potential as a vector. Bartonella was identified in T. rubrofasciata
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Identification of host genetic factors modulating β-lactam resistance in Escherichia coli harbouring plasmid-borne β-lactamase through transposon-sequencing Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-15
Hyunhee Kim, Travis Bell, Kihyun Lee, Jeongyun Jeong, James C. A. Bardwell, Changhan LeeSince β-lactam antibiotics are widely used, emergence of bacteria with resistance to them poses a significant threat to society. In particular, acquisition of genes encoding β-lactamase, an enzyme that degrades β-lactam antibiotics, has been a major contributing factor in the emergence of bacteria that are resistant to β-lactam antibiotics. However, relatively few genetic targets for killing these
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Reading of human acute immune dynamics in omicron SARS-CoV-2 breakthrough infection Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-15
Haibo Li, Hongyu Liu, Hongping Wu, Chang Guo, Wenting Zuo, Ying Zheng, Xiaoyan Deng, Jiuyang Xu, Yeming Wang, Zai Wang, Binghuai Lu, Baidong Hou, Bin CaoThe dynamics of the immune response to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) breakthrough infections remain unclear, particularly when compared to responses in naive individuals. In this longitudinal prospective cohort study, 13 participants were recruited. Peripheral blood samples were collected every other day until day 7 after symptom onset. Transcriptome sequencing, single-cell
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Influenza A hemagglutinin virus-like particles confer protection against influenza B virus infection Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-15
Jie Mao, Ki Back Chu, Gi-Deok Eom, Keon-Woong Yoon, Su In Heo, Hae-Ji Kang, Sung Soo Kim, Fu-Shi QuanInfluenza A hemagglutinin (HA), neuraminidase, and/or M2e-containing virus-like particles (VLPs) induce immune responses that contribute to protection against multiple influenza A virus subtypes. In this study, we investigated the protective efficacy of influenza A/H1H3 VLPs against influenza B virus infections (B/Colorado/06/2017 and B/Malaysia/2506/2004, Victoria lineage) in mice. A/H1H3 VLP immunization
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Eurasian 1C swine influenza A virus exhibits high pandemic risk traits Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-10
Valerie Le Sage, Carine K. Souza, Nicole C. Rockey, Meredith Shephard, Giovana C. Zanella, Bailey Arruda, Shengyang Wang, Elizabeth M. Drapeau, Joshua D. Doyle, Lingqing Xu, Dominique J. Barbeau, James C. Paulson, Anita K. McElroy, Scott E. Hensley, Tavis K. Anderson, Amy L. Vincent Baker, Seema S. LakdawalaABSTRACTRecent surveillance has identified an expansion of swine H1 1C influenza viruses in Eurasian swine. Since 2010, at least 21 spillover events of 1C virus into humans have been detected and three of these occurred from July to December of 2023. Pandemic risk assessment of H1 1C influenza virus revealed that individuals born after 1950 had limited cross-reactive antibodies, confirming that they
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Sepsis-induced inflammasome impairment facilitates development of secondary A. baumannii pneumonia Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-09
Aldona Jeznach, Karolina Sidor-Dzitkowska, Magdalena Bandyszewska, Małgorzata Grzanka, Piotr Popławski, Anna Marszalik, Joanna Domagała-Kulawik, Radosław Stachowiak, Grażyna Hoser, Tomasz SkireckiBACKGROUND Acinetobacter baumannii has become one of the most critical pathogens causing nosocomial pneumonia. Existing animal models of A. baumannii pneumonia are not relevant to the majority of critical care patients. We aimed to develop a novel model of secondary A. baumannii pneumonia in post-sepsis mice. METHODS A two-hit model of sepsis induced by cecal ligation and puncture followed by A. baumannii
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Grand Challenges on HIV/AIDS in China – The 5th Symposium, Yunnan 2024 Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-09
Zhiwei Chen, Jianqing Xu, Xia Jin, Jianhua Wang, Jinghe Huang, Hui Zhang, Ling Chen, Kai Deng, Weiping Cai, Linghua Li, Fusheng Wang, Zhiwei Wu, Hong Shang, Hao Wu, Linqi ZhangHIV-1 infection has led to 1.329 million people living with the virus and 0.474 millions of deaths by the middle of 2024 in China. Achieving the goal of ending HIV/AIDS in China by 2030 has faced several grand challenges including currently having a diagnostic rate of less than 85%, an estimated annual cost burden of 6.3 billion RMB for antiretroviral therapy (ART) alone, and the lack of therapeutic
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Influenza vaccine effectiveness among primary and secondary school students in Shenzhen during the 2023/24 influenza season Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-07
Yawen Jiang, Jiatong Sun, Fang Huang, Xu Xie, Xin Wang, Xiaoliang Wu, Min Jiang, Ying Sun, Hui Liu, Huiqiao Gu, Quan Lu, Xiaozhen Chen, Tiejian Feng, Shisong Fang, Jianhua Lu, Yuelong ShuDuring the winter influenza peaks, a total of 2689 ILI patients were collected from the two hospitals, with 58.61% of the participants vaccinated. Of the ILI patients, 761 (28.3%) were laboratory-confirmed influenza infection, with 76.7% being A(H3N2) and 22.8% B/Victoria. After adjusting for covariates, the adjusted VE (aVE) was 57.06% (95% CI, 48.59-64.13%). In the subtype/lineage and age subgroup
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A polyvalent DNA prime with matched polyvalent protein/GLA-SE boost regimen elicited the most robust and broad IgG and IgG3 V1V2 binding antibody and CD4+ T cell responses among 13 HIV vaccine trials Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-07
Zoe Moodie, Shuying Sue Li, Elena E. Giorgi, LaTonya D. Williams, One Dintwe, Lindsay N. Carpp, Shiyu Chen, Kelly E. Seaton, Sheetal S. Sawant, Lu Zhang, Jack Heptinstall, Shuying Liu, Nicole Grunenberg, Frank Tomaka, Supachai Rerks-Ngarm, Punnee Pitisuttithum, Sorachai Nitayaphan, Julie A. Ake, Sandhya Vasan, Giuseppe Pantaleo, Ian Frank, Lindsey R. Baden, Paul A. Goepfert, Michael Keefer, Mike ChirenjeDeveloping an effective HIV vaccine is a momentous challenge. An exceptionally wide range of candidate HIV vaccines have been tested, yet many were poorly immunogenic, and of the select few that advanced into efficacy trials, only one demonstrated any efficacy. Here we report the results of the largest-scale cross-protocol immunogenicity comparison to date: 13 HIV vaccine trials (including 36 vaccine
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Transmissible Staphylococcus pseudintermedius thwarts neutrophil extracellular trap-driven containment to promote invasive disease Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-04
Rita Haller, Yiyang Cai, Nicole de Buhr, Johanna C. Rieder, Dirk Schlüter, Claas Baier, Holger Rohde, Maren von Köckritz-Blickwede, Marius Vital, Volker WinstelMethicillin-resistant Staphylococcus pseudintermedius (MRSP) is an emerging zoonotic pathogen that causes a variety of clinical diseases in mammalian hosts. While it frequently causes infections in dogs and other domestic animals, accumulating evidence indicates that zoonotic spillover and cross-species transmission events favour local and invasive S. pseudintermedius infections in humans. However
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Serotype epidemiology and case-fatality risk of invasive pneumococcal disease: a nationwide population study from Switzerland, 2012–2022 Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-01
Werner C. Albrich, Nicolaj Just, Christian Kahlert, Carlo Casanova, Florent Baty, Markus HiltyIn Switzerland, thirteen-valent pneumococcal conjugate vaccine (PCV13) has been introduced in 2011. During the COVID-19 pandemic, cases of invasive pneumococcal disease (IPD) have decreased but consequences on the serotype epidemiology are less clear. The objective of the study has been to analyse the impact of PCV13 introduction and the COVID-19 pandemic on the IPD epidemiology and investigate the
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Distinct distribution of HEV-3 subtypes across humans, animals, and environmental waters in Sweden Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-01
Hao Wang, Marianela Patzi Churqui, Samaneh Taslimi, Timur Tunovic, Linn Dahlsten Andius, Martin Lagging, Kristina NyströmWe previously observed a notable discrepancy in the distribution of HEV-3 subtypes between wastewater and clinical samples in Sweden. To confirm this observation and comprehensively elucidate HEV-3 circulation patterns across humans, animals, and environmental waters in Sweden, we analysed the HEV genetic diversity in archived wastewater samples between late 2016 and early 2018, clinical cases between
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Characterizing the epidemiology of Mycoplasma pneumoniae infections in China in 2022–2024: a nationwide cross-sectional study of over 1.6 million cases Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-29
Yamin Sun, Pei Li, Ronghua Jin, Yaoming Liang, Jiale Yuan, Zhongxin Lu, Junrong Liang, Yingmiao Zhang, Hongyu Ren, Yuanyuan Zhang, Jianchun Chen, Yun Huang, Chuixu Lin, Yinghua Li, Jianfeng Zhou, Xi Wang, You Li, Senzhong Huang, Jianguo Xu, Tian QinMycoplasma pneumoniae (MP) is a leading cause of community-acquired pneumonia (CAP), accounting for 10-40% of cases in children. In China, the high prevalence of macrolide-resistant MP (MRMP) and recurrent MP epidemics place a significant burden on the healthcare system. Leveraging data from over 1.6 million cases, this study provides a comprehensive analysis of the epidemiological characteristics
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Thonningianin A disrupts pA104R−DNA binding and inhibits African swine fever virus replication Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-28
Quan-jie Li, Hui-han Shao, Lin-lin Zheng, Qian Liu, Chen-chao Huo, Dong-rong Yi, Tao Feng, Shan CenAfrican swine fever is a highly lethal disease caused by the African swine fever virus (ASFV), posing a significant threat to the global pig industry, wherease no approved treatments are currently available. The ASFV DNA-binding protein, pA104R, plays a critical role in viral genome packaging and replication, making it a key target for drug discovery. Through structure-based virtual screening, we identified
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GNLY+CD8+ T cells bridge premature aging and persistent inflammation in people living with HIV Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-28
Hui-Fang Wang, Chao Zhang, Li-Ping Zhang, Cheng Zhen, Liang Zhao, Hui-Huang Huang, Bao-Peng Yang, Si-Yuan Chen, Wei-Zhe Li, Ming-Ju Zhou, Qian-Xi Guo, Xia Li, Bai-Lu Yin, Fang Sun, Ji-Yuan Zhang, Zhixin Zhang, Fu-Sheng Wang, Qing-Lei ZengPeople living with HIV (PLWH) exhibit accelerated aging, characterized by systemic inflammation, termed "inflammaging." While T-cell expansion is prevalent in PLWH, its connection to inflammaging remains unclear. In this study, we analyzed the TCRβ repertoire of 257 healthy controls (HC) and 228 PLWH, revealing pronounced T cell clonal expansion in PLWH. The expansion was only partially reversed following
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Evaluation of global distribution, genetic evolution, and mammalian infectivity and pathogenicity of H13 and H16 avian influenza viruses Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-26
Xiang Li1, Ao Li, Fengyi Qu, Yi Li, Fangyuan Chen, Xinru Lv, Qing An, Mengdan Fei, Hongyu Chen, Hongrui Liang, Xiaotian Zhang, Jinghao Li, Mingyuan Yu, Siyuan Qin, Linhong Xie, Shenglai Yin, Zheng Huang, Siyuan Yang, Heting Sun, Xiang Li2, Hongliang ChaiH13 and H16 subtype avian influenza viruses (AIVs) typically infect Charadriiformes, are widely distributed throughout coastal regions worldwide, and pose a risk of spill-over to mammals. Systematic research on the epidemiology, transmission dynamics, and biological characteristics of these subtypes remains limited. To address this gap, we analyzed 20 years of wild bird influenza surveillance data
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Genomic islands and molecular mechanisms relating to drug-resistance in Clostridioides ( Clostridium ) difficile PCR ribotype 176 Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-26
Marcela Krutova, Vojtech Kovarovic, Marie Brajerova, Fanny Demay, Jaroslava Zikova, Suhanya Prasad, Anna Soltesova, Elena Novakova, Hanna Pituch, Ed Kuijper, Wiep Klaas Smits, Gabriela Balikova NovotnaOBJECTIVES To analyse characteristics of Clostridioides difficile PCR ribotype 176 clinical isolates from Poland, the Czech Republic and Slovakia with regard to the differences in its epidemiology. METHODS Antimicrobial susceptibility testing and whole genome sequencing were performed on a selected group of 22 clonally related isolates as determined by multilocus variable-number tandem repeat analysis
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Differential replication, pathology, and immune response of clade IIb mpox virus in C57BL/6 and BALB/c mice Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-26
Meimei Duan, Xiangmei Zhang, Xian Tang, Zhuohuan Li, Wenqi Huang, Qi Chen, Mingxia Zhang, Lin Cheng, Zheng ZhangWe have previously established a clade Ⅱb mpox virus (MPXV) pathogenic BALB/c mouse model for developing mpox countermeasures. Here, we comprehensively investigated the susceptibility of BALB/c and C57BL/6 mice to MPXV and found that Clade IIb MPXV was capable of rapid replication in the lungs of both mouse strains, thus triggering similar dynamic pathological changes and antibody responses. However
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Unique immune and other responses of human nasal epithelial cells infected with H5N1 avian influenza virus compared to seasonal human influenza A and B viruses Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-25
Kai Sen Tan, Jing Liu, Anand Kumar Andiappan, Zhe Zhang Ryan Lew, Ting Ting He, Hsiao Hui Ong, Douglas Jie Wen Tay, Zhen Qin Aw, Bowen Yi, Arfah Mohd Fauzi, Thinesshwary Yogarajah, Lee Ching Pei Carmen, Justin Jang Hann Chu, Vincent T. Chow, Mookkan Prabakaran, De-Yun WangHighly pathogenic avian influenza (HPAI) virus (e.g. H5N1) infects the lower airway to cause severe infections, and constitute a prime candidate for the emergence of disease X. The nasal epithelium is the primary portal of entry for respiratory pathogens, serving as the airway's physical and immune barrier. While HPAI virus predominantly infects the lower airway, not much is known about its interactions
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Genomic characterization of invasive Neisseria meningitidis in Spain (2011/12-2022/23): expansion of clonal complex 213 and the potential threat to 4CMenB vaccine strain coverage. Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-27
Josep Roca-Grande,Alba Mir-Cros,Carmen Muñoz-Almagro,Mayli Lung,Alba Bellés-Bellés,Jordi Càmara,Emilia Cercenado,M Ángeles Galán-Ladero,Andrea Martín-Nalda,Albert Moreno-Mingorance,Daniel Navarro de la Cruz,M Ángeles Orellana,Begoña Palop,Amaresh Pérez-Argüello,Guillem Puigsech-Boixeda,M Dolores Quesada,Alba Rivera,Ana Rodriguez-Fernandez,Enrique Ruiz de Gopegui,Carolina Sarvisé,Aleix Soler-GarciaInvasive meningococcal disease (IMD) is associated with significant global morbidity and mortality and is addressed by conjugated polysaccharide and subcapsular vaccines. In Spain, data on 4CMenB vaccine strain coverage and antimicrobial susceptibility are limited. This study aimed to describe the genomic epidemiology, predict 4CMenB vaccine strain coverage, and assess antimicrobial susceptibility
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Rational mpox vaccine design: immunogenicity and protective effect of individual and multicomponent proteins in mice Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-19
Xueting Cheng, Yawei Wang, Baoying Huang, Jialuo Bing, Tangqi Wang, Ruiwen Han, Shuting Huo, Shucai Sun, Li Zhao, Chang Shu, Yao Deng, Wenjie TanThe 2022 global mpox virus (MPXV) outbreak highlights the urgent need for safer, next-generation vaccines. We compared the immunogenicity and protective efficacy of individual and multicomponent membrane proteins of MPXV virions in mice to inform the development of a recombinant subunit vaccine against mpox. BALB/c mice were immunized with eukaryotically expressed A35R, A29L, B6R, and M1R proteins
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Hypermutability of Mycolicibacterium smegmatis due to ribonucleotide reductase-mediated oxidative homeostasis and imbalanced dNTP pools Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-18
Xiao Zhang, Yuchang Di, Yu Zhang, Youwei Hu, Mingzhe Chi, Jian Kang, Yuqing Zheng, Hengyu Wang, Yu Wang, Jiazhen Chen, Xuelian ZhangRibonucleotide reductase (RNR) catalyzes the synthesis of four deoxyribonucleoside triphosphates (dNTPs), which are essential for DNA replication. Although dNTP imbalances reduce replication fidelity and elevate mutation rates, the impact of RNR dysfunction on Mycobacterium tuberculosis (Mtb) physiology and drug resistance remains unknown. Here, we constructed inducible knockdown strains for the RNR
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Monocyte distribution width (MDW) as a reliable diagnostic biomarker for sepsis in patients with HIV Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-17
Jinfeng Sun, Yueming Shao, Rui Jiang, Tangkai Qi, Jingna Xun, Yinzhong Shen, Renfang Zhang, Liu Qian, Xialin Wang, Li Liu, Zhenyan Wang, Jianjun Sun, Yang Tang, Wei Song, Shuibao Xu, Junyang Yang, Youming Chen, Yi-Wei Tang, Hongzhou Lu, Jun ChenSepsis is a leading cause of death among patients with HIV, but early diagnosis remains a challenge. This study evaluates the diagnostic performance of monocyte distribution width (MDW) in detecting sepsis in patients with HIV. A prospective observational study was conducted at Shanghai Public Health Center, involving 488 hospitalized patients with HIV aged 18-65 between December 2022 and August 2023
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Vaccine effectiveness dynamics against influenza and SARS-CoV-2 in community-tested patients in France 2023-2024. Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-04-06
Claire Nour Abou Chakra,François Blanquart,Vincent Vieillefond,Vincent Enouf,Benoit Visseaux,Stéphanie Haim-Boukobza,Laurence Josset,Marie-Anne Rameix-Welti,Bruno Lina,Marta C Nunes,,Antonin BalThe epidemiology of respiratory viruses and vaccine effectiveness (VE) in the community are not well described. This study assessed VE against a positive test of influenza (VEf) and SARS-CoV-2 (VECov). Data from networks of community-based laboratories in France were collected during standard of care in the 2023-2024 epidemic season (n = 511,083 multiplex RT-PCR tests). Patients' demographics and symptoms
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The emergence of highly resistant and hypervirulent Escherichia coli ST405 clone in a tertiary hospital over 8 years Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-12
Min Wang, Zhijun Zhang, Zhifei Sun, Xinying Wang, Jie Zhu, Meijie Jiang, Shuping Zhao, Liang Chen, Qiang Feng, Hong DuThe emergence of carbapenem-resistant Escherichia coli (CREC) poses crucial challenges in clinical management, requiring continuous monitoring to inform control and treatment strategies. This study aimed to investigate the genomic and epidemiological characteristics of CREC isolates obtained from a tertiary hospital in China between 2015 and 2022. Next-generation sequencing was used for genomic profiling
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Exploring the standardization of human nasal antibody measurements Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-12
Xuanxuan Zhang, Yulong Fu, Si Chen, Guanxing Liu, Ying Wang, Qian He, Qian Wang, Na Li, Zhongfang Wang, Ling Chen, Junzhi Wang, Zhenglun Liang, Miao Xu, Qunying MaoMucosal immunity is crucial for preventing the infection and transmission of respiratory viruses. Nasal antibody is inversely correlated with a lower risk of infection with respiratory viruses. However, the current reference standard for nasal antibody assessment is serum-based, mainly consisting of monomeric IgG and IgA. The applicability of serum-derived standards for assessing nasal antibodies,
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Mpox virus poxin-schlafen fusion protein suppresses innate antiviral response by sequestering STAT2 Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-11
Pearl Chan, Zi-Wei Ye, Wenlong Zhao, Chon-Phin Ong, Xiao-Yu Sun, Pak-Hin Hinson Cheung, Dong-Yan JinMpox virus (MPXV) has to establish efficient interferon (IFN) antagonism for effective replication. MPXV-encoded IFN antagonists have not been fully elucidated. In this study, the IFN antagonism of poxin-schlafen (PoxS) fusion gene of MPXV was characterized. MPXV PoxS was capable of decreasing cGAS-produced 2'3'-cGAMP, like its ortholog poxin of vaccinia virus, which is the first known cytosolic nuclease
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CpG oligodeoxynucleotides and pan-serotype inhibitors control neurotropic Dengue infection in novel immune competent neonatal mouse model Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-10
Mirian Mendoza, Derek D.C. Ireland, Ha-Na Lee, Logan Kelly-Baker, Monica Chowdhury, Daniela Verthelyi, Mohanraj ManangeeswaranDengue virus (DENV) is a growing global public health threat. The lack of symptomatic immune competent animal models for Dengue has hindered the screening and development of effective therapeutics that can be used to control dengue virus replication and thereby control the progression to severe dengue disease. To address this, we established an infection model in neonatal C57BL/6 mice and showed that
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Evidence of Mpox clade IIb infection in primary human alveolar epithelium Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-10
Thanaphon Namporn, Suwimon Manopwisedjaroen, Montien Ngodngamthaweesuk, Ekawat Pasomsub, Natnicha Jiravejchakul, Rattatammanoon Saengfak, Marea Jikka Nealiga, Arunsajee Sae-be, Aalok Basu, Parichart Naruphontjirakul, Suradej Hongeng, Teresa D. Tetley, Arunee Thitithanyanont, Pakatip RuenraroengsakMonkeypox virus (Mpox) has been recognized for causing distinct skin lesions and is primarily transmitted through skin and sexual contact. To date, the transmissibility and pathogenesis of the Mpox virus in distal human lung has never been completely explored. Here the transmission pathways and Mpox tropism on patient-derived air-liquid epithelium (ALE) model fabricated using isolated primary human
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Dengue virus and lipid metabolism: unravelling the interplay for future therapeutic approaches Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-10
Ying Xie, Li Jiao, Qiangming SunIn recent years, Dengue virus (DENV) has continued to pose significant health risks in tropical and subtropical areas worldwide, raising health alerts worldwide. It can cause hyperviremia in humans and can even lead to fatal clinical diseases. The life cycle of DENV is intricately linked to cellular lipids, and the virus selectively utilizes relevant enzymes involved in lipid metabolism to modulate
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Eukaryotic RNA binding protein hnRNPH1 suppresses influenza A virus replication through interaction with virus NS1 protein Emerg. Microbes Infect. (IF 8.4) Pub Date : 2025-03-07
Jinyu Wang, Yang Zhang, Lishan Sun, Zihan Wang, Cui Hao, Wei WangThe NS1 protein of influenza A virus (IAV) is a multi-functional protein which can antagonize host immune system and facilitate viral replication by interacting with host factors. However, the novel partners in host cells interacting with NS1 need to be fully elucidated. In the current study, we identified hnRNPH1 as a novel binding partner of NS1 to regulate IAV replication. Notably, overexpression