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Plasma proteomics identifies S100A8/A9 as a novel biomarker and therapeutic target for fulminant myocarditis J. Adv. Res. (IF 11.4) Pub Date : 2025-06-04
Wu He, Junfang Wu, Dongxue Wang, Wendong Chen, Yongcui Yan, Qiongyao He, Chenze Li, Qianying Yang, Chuanxi Huang, Zheng Wen, Chen Chen, Fuchu He, Liujun Tang, Dao Wen Wang -
Transcription-templated assembly of the nucleolus in the Caenorhabditis elegans embryo Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Nishant KodanRabeya HussainiStephanie C. WeberJane KondevLishibanya MohapatraaSchool of Physics and Astronomy, College of Science, Rochester Institute of Technology, Rochester, NY 14623bDepartment of Physics, New York University, New York, NY 10003cDepartment of Biology, McGill University, Montreal, QC H3A 1B1, CanadadDepartment of Physics, McGill University, Montreal, QC H3A 2T8, CanadaeDepartmentProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceHow membraneless organelles like nucleolus assemble within cells is not well understood. Recent experiments suggest that transcription of ribosomal RNA actively drives nucleolar assembly. Our proposed model of active transcription-templated ...
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Can increasing the size and flexibility of a molecule reduce decoherence and prolong charge migration? Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Alan ScheideggerNikolay V. GolubevJiří J. L. VaníčekaLaboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne, Lausanne CH-1015, SwitzerlandbDepartment of Physics, University of Arizona, Tucson, AZ 85721Proceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceTogether with tunneling and entanglement, coherence belongs among the hallmarks of quantum mechanics and among the prerequisites for building quantum devices. In attochemistry, the loss of electronic coherence induced by nuclear motion ...
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Solution structure and synaptic analyses reveal determinants of bispecific T cell engager potency Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Alexander LeithnerOskar StauferTanmay MitraFalk LibertaSalvatore ValvoMikhail KutuzovHannah DadaJacob SpaethWeijie ZhouFelix SchieleSophia ReindlHerbert NarStefan HoererMaureen CramesStephen ComeauDavid YoungSarah LowEdward JenkinsSimon J. DavisDavid KlenermanAndrew NixonNoah PefaurDavid WyattOmer DushekSrinath KasturiranganMichael L. DustinaThe Kennedy Institute of Rheumatology, Nuffield DepartmentProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceBispecific T cell engagers (TcEs) are immunotherapeutic drugs that trigger the destruction of cancer cells by linking T cells to cancer cells through specific surface molecules (antigens). We designed a series of TcEs with varying distances ...
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Estimating wage disparities using foundation models Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Keyon VafaSusan AtheyDavid M. BleiaHarvard Data Science Initiative, Harvard University, Cambridge, MA 02138bGraduate School of Business, Stanford University, Stanford, CA 94305cStanford Institute for Human-Centered Artificial Intelligence, Stanford University, Stanford, CA 94305dDepartment of Computer Science, Columbia University, New York, NY 10027eDepartment of Statistics, Columbia University, NewProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceUnderstanding differences in outcomes between social groups—such as wage gaps between men and women—remains a central challenge in social science. While researchers have long studied how observable factors contribute to these differences, ...
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Exploring diverse supramolecular tessellation through hierarchical assemblies of nonalternant nanographene Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Jian SunZiqi DengDavid Lee PhillipsJunzhi LiuaDepartment of Chemistry, The University of Hong Kong - Chinese Academy of Sciences Joint Laboratory on New Materials and Shanghai-Hong Kong Joint Laboratory on Chemical Synthesis, The University of Hong Kong, Hong Kong 999077, ChinabState Key Laboratory of Synthetic Chemistry, The University of Hong Kong, Hong Kong 999077, ChinacMaterials Innovation InstituteProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceThe tessellated material is poised to become a fascinating subject in materials science, following the initial exploration of quasicrystals. Specifically, supramolecular tessellation at the molecular level has primarily been observed in ...
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Environmental DNA adsorption to chitin can promote horizontal gene transfer by natural transformation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Jacob D. HoltYixuan PengTriana N. DaliaAnkur B. DaliaCarey D. NadellaDepartment of Biological Sciences, Dartmouth, Hanover, NH 03755bDepartment of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755cDepartment of Biology, Indiana University, Bloomington, IN 47405Proceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceThe human pathogen and marine microbeVibrio choleraehas been shown to activate extracellular DNA uptake and transformation when in contact with chitin, the most abundant structural biomaterial in the oceans and a primary source of nutrition ...
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Genomic analyses identify 15 risk loci and reveal HDAC2, SOX2-OT, and IGF2BP2 in a naturally occurring canine model of gastric cancer Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Shawna R. CookSanne HugenJessica J. HaywardThomas R. FamulaJanelle M. BelangerElizabeth McNielHille FietenAnita M. OberbauerPeter A. J. LeegwaterElaine A. OstranderPaul J. J. MandigersJacquelyn M. EvansaBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853bDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, IthacaProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceGastric cancer is the fifth most common cause of human cancer deaths, but the genetic underpinnings are poorly understood. Harnessing the genetic homogeneity of purebred dogs, we identify 18 loci governing gastric cancer susceptibility in a ...
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Himalayan “S-type” granite generated from I-type sources Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Huixia DingZeming ZhangMatthew J. KohnaState Key Laboratory of Geological Processes and Mineral Resources, and School of Earth Sciences and Resources, China University of Geosciences, Beijing 100083, ChinabInstitute of Geology, Chinese Academy of Geological Sciences, Beijing 100037, ChinacDepartment of Geosciences, Boise State University, Boise, ID 83725Proceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceClassically, granites are separated into two broad categories—“I-type” vs. “S-type”—representing different igneous vs. (meta)sedimentary rock sources for melting. Their geochemistry differs for diverse geochemical systems. Himalayan granites ...
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Proofreading and single-molecule sensitivity in T cell receptor signaling by condensate nucleation Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
William L. WhiteHailemikael K. YirdawAriel J. Ben-SassonJay T. GrovesDavid BakerHao Yuan KuehaDepartment of Bioengineering, University of Washington, Seattle, WA 98195bInstitute for Protein Design, University of Washington, Seattle, WA 98195cDepartment of Chemistry, University of California Berkeley, Berkeley, CA 94720dInstitute for Digital Molecular Analytics and Science, Nanyang Technological UniversityProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceTo fight infections and cancer, T cells must selectively recognize low levels of foreign peptides from pathogens or cancer cells, but the mechanisms that enable these properties remain unclear. Using computational modeling and experiments, we ...
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Rhomboid-mediated cleavage of the immune receptor XA21 protects grain set and male fertility in rice Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Satyam VergishXiaoen HuangGuiyun ZhangBeatriz de Toledo FranceschiJian-Liang LiXiao-Xia WuJoana NurajJose C. Huguet-TapiaApekshya ParajuliXiuhua ChenRitu ShekharDali LiuWu-Ming XiaoShijuan DouGuo-zhen LiuErica M. GossLiya PiSixue ChenKaren E. KochWen-Yuan SongaDepartment of Plant Pathology, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611bIntegrative BioinformaticsProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceThe protection of key developmental processes from the immune system, while allowing the immune system to defend against pathogens, is central for the survival and reproduction of nearly all multicellular organisms. The rice immune receptor ...
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Task difficulty modulates the effect of mind wandering on phase dynamics Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Zhengkun LongGeorg NorthoffXiaolan FuaState Key Laboratory of Cognitive Science and Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing 100101, ChinabDepartment of Psychology, University of Chinese Academy of Sciences, Beijing 100049, ChinacSchool of Psychology, Shenzhen University, Shenzhen, Guangdong 518060, ChinadMind, Brain Imaging and Neuroethics Research Unit, The Royal’sProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceWe demonstrate that external (sensory and motor processing) and internal cognition (mind wandering) are dynamically interdependent. Easier external tasks require fewer executive resources, leaving more cognitive resources for internal mind ...
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Modular arrangement of synaptic and intrinsic homeostatic plasticity within visual cortical circuits Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Wei WenAdriana M. PradaGina G. TurrigianoaDepartment of Biology, Brandeis University, Waltham, MA 02453Proceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceHomeostatic plasticity maintains normal brain functions by constraining various network features of neural circuits, yet how this is realized on the cellular level remains unknown. Synaptic and intrinsic forms of homeostatic plasticity adjust ...
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CRISPR screen reveals a simultaneous targeted mechanism to reduce cancer cell selenium and increase lipid oxidation to induce ferroptosis Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Sophia M. LamperisKaylin M. McMahonAndrea E. CalvertJonathan S. RinkKarthik VasanMadhura R. PandkarEliana U. CrentsilZachary R. ChalmersNatalie R. McDonaldCameron J. KosmalaMarcelo G. BoniniDaniela MateiLeo I. GordonNavdeep S. ChandelC. Shad ThaxtonaDepartment of Urology, Northwestern University, Feinberg School of Medicine, Chicago, IL 60611bSimpson Querrey Institute for BioNanotechnology, NorthwesternProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceFerroptosis is an iron-dependent cell death mechanism that results from increased oxidation of cell membrane lipids. We conducted a CRISPR-based positive selection screen in clear cell ovarian cancer cells treated with a nanoparticle drug to ...
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Phage-induced protection against lethal bacterial reinfection Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Yikun XingHaroldo J. Hernandez SantosLing QiuSamantha R. RitterJacob J. ZulkRachel LahowetzKathryn A. PatrasAusten L. TerwilligerAnthony W. MaressoaTAILOR Labs, Baylor College of Medicine, Houston, TX 77030bDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030cAlkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, TX 77030Proceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceIn 2021, antimicrobial-resistant bacteria were responsible for 1.14 million deaths and associated with 4.71 million deaths globally. Patients who experience sepsis often face a higher risk of reinfections and hospital readmissions. To combat ...
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Oxr1 and Ncoa7 regulate V-ATPase to achieve optimal pH for glycosylation within the Golgi apparatus and trans-Golgi network Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Shin-ichiro YoshimuraTomoaki SobajimaMasataka KuniiAkihiro HaradaaDepartment of Cell Biology, Graduate School of Medicine, The University of Osaka, Suita 565-0871, Osaka, JapanProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceIn the secretory pathway, the pH within organelles is gradually acidified, starting at 7.1 to 7.2 in the endoplasmic reticulum, decreasing to 6.0 to 6.7 in the Golgi apparatus/trans-Golgi network (Golgi/TGN), and reaching 4.5 to 5.0 in ...
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Label-free high-throughput live-cell sorting of genome-wide random mutagenesis libraries for metabolic traits by Raman flow cytometry Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-05-30
Xixian WangSen WangZhidian DiaoXibao HouYanhai GongQing SunJiaping ZhangLihui RenYuandong LiYuetong JiWei ShenYifeng YinShi HuangXiaojin SongQiu CuiYingang FengJian XuBo MaaState Key Laboratory of Photoelectric Conversion and Utilization of Solar Energy, Key Laboratory of Shandong Energy Biological Genetic Resources, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of SciencesProceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025. SignificanceSorting cells with target metabolic functions from a mutant pool exhibiting substantial genetic diversity is often the rate-limiting step in synthetic biology. Here, we developed a label-free, high-throughput Raman-activated cell sorting ...
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In This Issue Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Proceedings of the National Academy of Sciences, Volume 122, Issue 22, June 2025.
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Science-integrity project will root out bad medical papers ‘and tell everyone’ Nature (IF 50.5) Pub Date : 2025-06-04
Group behind Retraction Watch aims to pinpoint the most influential flawed health data.
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Genomics pioneer fired from firm he founded: ‘It was not easy to domesticate me’ Nature (IF 50.5) Pub Date : 2025-06-04
Kári Stefánsson, who last month left the Icelandic genetics company deCODE, spoke to Nature about his legacy.
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Why we should protect the high seas from all extraction, forever Nature (IF 50.5) Pub Date : 2025-06-04
Callum M. Roberts, Emilia Dyer, Sylvia A. Earle, Andrew Forrest, Julie P. Hawkins, Ove Hoegh-Guldberg, Jessica J. Meeuwig, Daniel Pauly, Stuart L. Pimm, U. Rashid Sumaila, Johan Rockström, Mark LynasExploitation of the high seas risks doing irreversible damage to biodiversity, climate stability and ocean equity. A consensus must be built now to save them.
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How a mysterious epidemic of kidney disease is killing thousands of young men Nature (IF 50.5) Pub Date : 2025-06-04
Repeated damage from extreme heat over time seems to be a leading factor causing kidneys to fail.
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‘You’re just not welcome’: researchers grapple with US plan to revoke Chinese student visas Nature (IF 50.5) Pub Date : 2025-06-03
Scientists are eyeing their legal options in anticipation of new immigration actions.
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Daily briefing: NIH foreign-grant cuts could leave thousands without care worldwide Nature (IF 50.5) Pub Date : 2025-06-03
Cuts to US ‘foreign subawards’ will abruptly end hundreds of clinical trials abroad. Plus, an mpox outbreak is overwhelming Sierra Leone’s health system and a rock with a painted dot that just might represent a nose.
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Defect passivation and transformation of Ti3C2Tx MXene hollow microsphere for superior electrochemical performance and sodium-ions storage J. Adv. Res. (IF 11.4) Pub Date : 2025-06-03
Ningning Liu, Xiaochen Zhang, Jinfeng Chen, Fei Yu, Jie Ma -
Design of a sustained-release nanosystem for ultra-efficient absorption of anthocyanins and regulating lung damage through the “lung-gut” axis J. Adv. Res. (IF 11.4) Pub Date : 2025-06-03
Jin-Long Tian, Nuo Wang, Qin-Fu Zhao, Zhi-Huan Zang, Zhi-Ying Li, Zhen-Yu Wang, Ying Zhou, Bao-Ru Yang, Sergey S. Makarov, Anton I. Chudetsky, Liang Wang, Ying He, Bin Li -
Should there be a national holiday in honour of chemists? Nature (IF 50.5) Pub Date : 2025-06-03
Snippets from Nature’s past.
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Address the psychological toll of kidney disease Nature (IF 50.5) Pub Date : 2025-06-03
Letter to the Editor
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Trade wars could affect food security in low-income nations Nature (IF 50.5) Pub Date : 2025-06-03
Letter to the Editor
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European Union’s strict conservation targets should guide global marine policy Nature (IF 50.5) Pub Date : 2025-06-03
Letter to the Editor
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Disaster relief needs community trust — authorities must earn it Nature (IF 50.5) Pub Date : 2025-06-03
Governments and institutions must shift from top-down approaches to collaborations with local communities.
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Illustrators call out journals and news sites for using AI art Nature (IF 50.5) Pub Date : 2025-06-03
Bot-made art undermines research and public trust in science, say illustrators frustrated by inaccurate and outlandish depictions.
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Exclusive: Inside the thriving wild-animal markets that could start the next pandemic Nature (IF 50.5) Pub Date : 2025-06-03
Live-animal markets are a natural laboratory for viruses to evolve and spark deadly outbreaks, yet scientists lack support to study the risks they pose.
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Brain-reading devices raise ethical dilemmas — researchers propose protections Nature (IF 50.5) Pub Date : 2025-06-03
Delegates to a United Nations meeting on neurotechnology ethics have devised the first set of global guidelines on maintaining users’ privacy.
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Daily briefing: CAR-T proves its worth in hard-to-treat solid tumours Nature (IF 50.5) Pub Date : 2025-06-02
A clinical trial of CAR T cells is among the first to show that the treatment can work for solid tumours. Plus, humpbacks’ big eyes are nearsighted and how researchers are turbocharging ginseng.
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Author Correction: DNA-guided transcription factor interactions extend human gene regulatory code Nature (IF 50.5) Pub Date : 2025-06-03
Zhiyuan Xie, Ilya Sokolov, Maria Osmala, Xue Yue, Grace Bower, J. Patrick Pett, Yinan Chen, Kai Wang, Ayse Derya Cavga, Alexander Popov, Sarah A. Teichmann, Ekaterina Morgunova, Evgeny Z. Kvon, Yimeng Yin, Jussi TaipaleCorrection to: Nature https://doi.org/10.1038/s41586-025-08844-z Published online 9 April 2025
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Author Correction: Methane oxidation to ethanol by a molecular junction photocatalyst Nature (IF 50.5) Pub Date : 2025-06-03
Jijia Xie, Cong Fu, Matthew G. Quesne, Jian Guo, Chao Wang, Lunqiao Xiong, Christopher D. Windle, Srinivas Gadipelli, Zheng Xiao Guo, Weixin Huang, C. Richard A. Catlow, Junwang TangCorrection to: Nature https://doi.org/10.1038/s41586-025-08630-x Published online 20 January 2025
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Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Kyle T. David, Joshua G. Schraiber, Johnathan G. Crandall, Abigail L. Labella, Dana A. Opulente, Marie-Claire Harrison, John F. Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis RokasMany remarkable phenotypes have repeatedly occurred across vast evolutionary distances. When convergent traits emerge on the tree of life, they are sometimes driven by the same underlying gene families, while other times, many different gene families are involved. Conversely, a gene family may be repeatedly recruited for a single trait or many different traits. To understand the general rules governing
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Multiple cortical systems influence a single vibrissa muscle Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Aman Maharjan, Jason M. Guest, Jean-Alban Rathelot, Fiorella M. Gomez Osorio, Peter L. Strick, Marcel OberlaenderWhat is the neural substrate that enables the cerebral cortex to control a single mystacial vibrissa and orchestrate its movement? To answer this question, we injected rabies virus into the intrinsic muscle that protracts the rat C3 vibrissa and used retrograde transneuronal transport to identify the cortical neurons that influence the muscle. A surprisingly diverse set of cortical areas is the origin
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Single-cell resolution uncovers neighboring cell subtypes that share steroidogenic capacity during fetal testis development Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Keer Jiang, Zirui Fu, Philippos Tsourkas, Anbarasi Kothandapani, Tyler Kearse, Sean J. McIlwain, Chloé Mayère, Serge Nef, Joan S. JorgensenHistorically, endocrine cells were perceived to coordinate their output in a uniform manner. Recently however, single-cell technologies have uncovered heterogeneity within these populations, indicating that individual cells may operate as independently regulated units. Using high-resolution tools such as single-molecule fluorescent in situ hybridization (sm-FISH) and single-cell RNA sequencing (scRNA-seq)
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Increasing boreal fires reduce future global warming and sea ice loss Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Edward Blanchard-Wrigglesworth, Patricia DeRepentigny, Dargan M. W. FriersonBiomass burning can affect climate via the emission of aerosols and their subsequent impact on radiation, cloud microphysics, and surface and atmospheric albedo. Biomass burning emissions (BBEs) over the boreal region have strongly increased during the last decade and are expected to continue increasing as the climate warms. Climate models simulate aerosol processes, yet historical and future Coupled
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Disrupted diencephalon development and neuropeptidergic pathways in zebrafish with autism-risk mutations Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Mary E. S. Capps, Anna J. Moyer, Claire L. Conklin, Verdion Martina, Emma G. Torija-Olson, Morgan C. Klein, William C. Gannaway, Caleb C. S. Calhoun, Michael D. Vivian, Summer B. ThymeHundreds of human mutations are linked to autism and related disorders, yet the functions of many of these mutated genes during vertebrate neurodevelopment are unclear. We generated 27 zebrafish mutants with presumptive protein-truncating mutations or specific missense variants corresponding to autism-risk alleles in 17 human genes. We observed baseline and stimulus-driven behavioral changes at larval
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Reciprocal projections between the globus pallidus externa and cortex span motor and nonmotor regions Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Emily A. Ferenczi, Wengang Wang, Anushka Biswas, Trent Pottala, Yihuan Dong, Alison K. Chan, Madeline A. Albanese, Raina S. Sohur, Tingying Jia, Kevin J. Mastro, Bernardo L. SabatiniThe globus pallidus externa (GPe) is a heterogeneous nucleus of the basal ganglia, with intricate connections to other basal ganglia nuclei, as well as direct connections to the cortex. The anatomic, molecular, and electrophysiologic properties of cortex-projecting pallidocortical neurons are not well characterized. Here, we show that pallidocortical neurons project to diverse motor and nonmotor cortical
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BRCA2 reversion mutation–independent resistance to PARP inhibition through impaired DNA prereplication complex function Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Kyrie Pappas, Matteo Ferrari, Perianne Smith, Subhiksha Nandakumar, Zahra Khan, Serina B. Young, Justin LaClair, Marco Vincenzo Russo, Emmet Huang-Hobbs, Nikolaus Schultz, Wassim Abida, Wouter Karthaus, Maria Jasin, Charles L. SawyersRecent approvals of polymeric adenosine diphosphate ribose (poly(ADP-ribose) polymerase inhibitors (PARPi) for BRCA-mutant metastatic castration resistant prostate cancer necessitate an understanding of the factors that shape sensitivity and resistance. Reversion mutations that restore homologous recombination (HR) repair are detected in ~50 to 80% of BRCA-mutant patients who respond but subsequently
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CACNA1D is a circadian gene and causes familial advanced sleep phase Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
John M. Webb, Fayal Abderemane-Ali, Liza Ashbrook, Mingyang Ma, Neha Nibber, Xianlin Zou, Maya Yamazaki, Elizabeth Wohler, Nara Sobreira, Daniel L. Minor, Ying-Hui Fu, Louis J. PtáčekFamilial advanced sleep phase (FASP) is a heritable human sleep trait characterized by early sleep onset and offset times. We have identified five variants in five different families in the human voltage-gated calcium channel subunit alpha1 D ( CACNA1D ) that cosegregate with FASP. The variants in CACNA1D lead to altered channel dynamics in vitro. A mouse model of the E427K variant has a normal circadian
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Deciphering decomposition pathways of high explosives with cryogenic X-ray Raman spectroscopy Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Oscar A. Paredes Mellone, Michael H. Nielsen, Jeffrey Thomas Babicz, John Vinson, Trevor M. Willey, Dimosthenis SokarasWe employed cryogenic X-ray Raman spectroscopy to investigate the early-stage decomposition of the high explosive molecule hexanitrohexaazaisowurtzitane (CL-20). By systematically varying the radiation dose under cryogenic conditions, we induced the decomposition of the molecule using ionizing radiation and observed the evolution of spectral features at the carbon, nitrogen, and oxygen K edges. Through
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Population sequencing for phylogenetic diversity and transmission analyses Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Talima Pearson, Tara Furstenau, Colin Wood, Vanessa Rigas, Kylie Drake, Jason Sahl, Sara Maltinsky, Bart J. Currie, Mark Mayo, Carina Hall, Paul Keim, Viacheslav FofanovGenomic diversity in pathogen populations is foundational for evolution and adaptation. Understanding population-level diversity is also essential for tracking sources and revealing detailed pathways of transmission and spread. For bacteria, culturing, isolating, and sequencing the large number of individual colonies required to adequately sample diversity can be prohibitively time-consuming and expensive
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Study design and the sampling of deleterious rare variants in biobank-scale datasets Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Margaret C. Steiner, Daniel P. Rice, Arjun Biddanda, Mariadaria K. Ianni-Ravn, Christian Porras, John NovembreOne key component of study design in population genetics is the “geographic breadth” of a sample (i.e., how broad a region across which individuals are sampled). How the geographic breadth of a sample impacts observations of rare, deleterious variants is unclear, even though such variants are of particular interest for biomedical and evolutionary applications. Here, in order to gain insight into the
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Epithelial Regnase-1 inhibits colorectal tumor growth by regulating IL-17 signaling via degradation of NFKBIZ mRNA Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Eriko Iguchi, Atsushi Takai, Natsumi Oe, Yosuke Fujii, Mayuki Omatsu, Haruhiko Takeda, Takahiro Shimizu, Takahisa Maruno, Yuki Nakanishi, Masanori Yoshinaga, Takashi Maruyama, Hiroyuki Marusawa, Kazutaka Obama, Osamu Takeuchi, Hiroshi SenoRegnase-1 is a ribonuclease that regulates inflammation in immune cells by degrading cytokine mRNA. Regnase-1 was identified as one of the frequently mutated genes in the inflamed colorectal epithelium of patients with ulcerative colitis; however, its significance in intestinal epithelial cells during the tumorigenic process remains unknown. Therefore, we developed an Apc Min/+ mouse model lacking
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Natural dispersal is better than translocation for reducing risks of inbreeding depression in eastern black rhinoceros ( Diceros bicornis michaeli ) Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Ronald. V. K. Mellya, J. Grant C. Hopcraft, William Mwakilema, Ernest M. Eblate, Simon Mduma, Bakari Mnaya, Idrissa S. Chuma, Emmanuel S. Macha, Dickson Wambura, Robert D. Fyumagwa, Elizabeth Kilbride, Umer Z. Ijaz, Barbara K. Mable, Anubhab KhanDue to increasing anthropogenic impacts, many species survive only in small and isolated populations. Active conservation management to reduce extinction risk includes increasing habitat connectivity, translocations from captive populations, or intensive surveillance of highly protected closed populations. Advances in sequencing technology mean that it is now possible to consider the genomic impacts
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Detection of the knee point in lithium-ion battery degradation using a state-of-charge-dependent parameter Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Hyunjae Kim, Inwoo Kim, Minsoo Kim, Seongha An, Hyo Chul Ahn, Dongmin Park, Jun Hee Lee, Chun Yong Kang, Jang Wook ChoiThe rapidly expanding lithium-ion battery (LIB) market has heightened the demand for efficient diagnostics for in-use cells and the reliable grading of used cells. Various purpose-built analysis tools and statistical algorithms have been developed, but often rely on redundant instrumentation and computationally intensive procedures. Here, we propose using the variance of the capacity difference between
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The prevalence of functional limitations in the US workforce Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Hailey Clark, Bastian Ravesteijn, Kathleen J. Mullen, Nicole MaestasThis research paper investigates the prevalence of functional limitations among employed adults in the United States and the association between these limitations and medical conditions. The authors administered a survey adapted from the Dutch Functional Abilities List to a nationally representative sample of US adults ages 22 and older, finding that nearly three-quarters of working adults report at
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Polaron catastrophe within quantum acoustics Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Alhun Aydin, Joonas Keski-Rahkonen, Anton M. Graf, Shaobing Yuan, Xiao-Yu Ouyang, Özgür E. Müstecaplıoğlu, Eric J. HellerThe quantum acoustic framework has recently emerged as a nonperturbative, coherent approach to electron–lattice interactions, uncovering rich physics often obscured by perturbative methods with incoherent scattering events. Here, we model the strongly coupled dynamics of electrons and acoustic lattice vibrations within this framework, representing lattice vibrations as coherent states and electrons
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Parallel sensory compensation following independent subterranean colonization by groundwater salamanders ( Eurycea ) Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Ruben U. Tovar, Brittany A. Dobbins, Nicholas R. Hartman, Sheena Leelani, Thomas J. Devitt, Dana M. García, Paul M. Gignac, David C. Cannatella, David M. HillisLineages that have invaded subterranean environments have repeatedly evolved remarkable adaptations to life in darkness. However, observational and experimental studies in additional natural systems are needed to further our understanding of repeated evolution and convergence. In Texas, a radiation of groundwater salamanders (genus Eurycea ), with independent invasions of subterranean karstic environments
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High-throughput metabolic engineering of Yarrowia lipolytica through gene expression tuning Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Wei Jiang, Shengbao Wang, Daniel Ahlheit, Tommaso Fumagalli, Zhijie Yang, Shreemaya Ramanathan, Xinglin Jiang, Tilmann Weber, Jonathan Dahlin, Irina BorodinaThe challenge of accurately predicting which genetic alternations lead to the desired phenotype necessitates high-throughput metabolic engineering approaches where numerous hypotheses can be tested simultaneously. We describe the CRISPR-Cas9-based method TUNE YALI that enables high-throughput tuning of gene expression in the common industrial yeast Yarrowia lipolytica . The method is based on replacing
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Transcranial direct current stimulation neuromodulates intracranial cognitive evoked activity in humans Proc. Natl. Acad. Sci. U.S.A. (IF 9.4) Pub Date : 2025-06-03
Mireille Tabikh, Tom Quetu, Louis Maillard, Sophie Colnat-Coulbois, Bruno Rossion, Laurent KoesslerTranscranial direct current stimulation (tDCS) is an easy to use, noninvasive brain stimulation technique that gained prominence for its potential in cognitive rehabilitation. Electroencephalography (EEG), which records electrical brain activity with a high temporal resolution, is well suited to quantify tDCS-induced neuromodulation in humans. However, most studies relying on scalp EEG recordings or
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Voxtalisib inhibits enterovirus 71 replication by downregulating host RAN and restoring IFN–STAT signaling J. Adv. Res. (IF 11.4) Pub Date : 2025-06-02
Wang Delong, Yang Qingyu, Zhu Guangyan, Li Zhengnan, Wu Chengyuan, Hu Xujuan, Long Gangyu, Wang Qian, Chen Yuanyuan, Xu Congrui, Huang Chaolin, Han Yang, Zhang Dingyu -
Single-nucleus RNA sequencing reveals Cntnap2+ astrocytes triggering a hypertensive effect in the rostral ventrolateral medulla by disrupting glutamate uptake J. Adv. Res. (IF 11.4) Pub Date : 2025-06-02
Shuai Zhang, Lei Tong, Zhangyan Ren, Tengteng Dai, Linping Wang, Dongfei Zhu, Haisheng Liu, Liucun Zhu, Dong Huang, Dongshu Du -
Association of hematopoietic loss of Y chromosome with valvular heart disease incidence and sex susceptibility J. Adv. Res. (IF 11.4) Pub Date : 2025-06-02
Chenxuan Zhao, Yuanfeng Huang, Tianqi Ma, Xunjie Cheng, Jinchen Li, Guogang Zhang, Yongping Bai, Yu Tan